CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY47138	Canola	cytosol	97.15	97.71
Bra016214.1-P	Field mustard	cytosol	97.25	97.52
AT5G42140.2	Thale cress	cytosol, endoplasmic reticulum, nucleus	86.32	84.32
KRH08750	Soybean	cytosol	44.54	73.63
KRG91629	Soybean	cytosol	70.85	67.94
VIT_18s0166g00210.t01	Wine grape	cytosol	72.46	67.58
KRH35179	Soybean	cytosol	71.42	67.14
CDY70949	Canola	cytosol	22.51	66.95
KRH70333	Soybean	cytosol	70.18	65.98
Solyc04g071040.2.1	Tomato	cytosol	70.37	65.81
PGSC0003DMT400002081	Potato	cytosol	70.28	65.72
KRH30228	Soybean	cytosol	25.36	65.6
CDX88324	Canola	cytosol	63.82	63.34
CDY48550	Canola	cytosol	58.88	63.27
CDX87557	Canola	cytosol	64.39	63.19
CDX68076	Canola	cytosol	49.57	62.89
Os01t0964800-01	Rice	mitochondrion	34.19	62.18
KRH08736	Soybean	endoplasmic reticulum	40.55	61.26
GSMUA_Achr2P20470_001	Banana	endoplasmic reticulum, plasma membrane	55.94	59.68
HORVU1Hr1G002740.1	Barley	cytosol, mitochondrion, nucleus, plastid	50.33	58.43
TraesCS1A01G020400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	50.24	58.32
KRH30227	Soybean	cytosol	24.98	58.31
Zm00001d011805_P001	Maize	cytosol	50.43	58.22
TraesCS1D01G019900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	50.14	58.09
HORVU3Hr1G112690.2	Barley	cytosol, plastid	50.05	58.04
TraesCS1B01G024400.1	Wheat	cytosol, mitochondrion, nucleus	49.95	57.99
KXG34192	Sorghum	cytosol	50.14	57.89
TraesCS3D01G522600.2	Wheat	cytosol	47.67	57.77
TraesCS3A01G512900.1	Wheat	cytosol	49.76	57.52
GSMUA_Achr8P07850_001	Banana	cytosol	60.3	57.47
CDY66504	Canola	cytosol	44.63	56.97
TraesCS3B01G581600.2	Wheat	cytosol	49.29	56.91
GSMUA_Achr6P13030_001	Banana	endoplasmic reticulum	52.8	56.79
Zm00001d035723_P001	Maize	cytosol, mitochondrion, nucleus, plastid	49.19	56.49
EES18851	Sorghum	cytosol, plastid	49.0	56.33
Os05t0106700-00	Rice	mitochondrion	49.86	55.85
Zm00001d006773_P001	Maize	cytosol	21.37	55.83
Os04t0686200-01	Rice	plasma membrane	55.18	54.97
EES13137	Sorghum	cytosol	55.46	54.89
HORVU3Hr1G108180.1	Barley	mitochondrion	8.55	53.89
GSMUA_AchrUn_...	Banana	nucleus	58.5	53.43
Zm00001d002876_P001	Maize	mitochondrion	54.99	53.27
TraesCS2A01G581400.1	Wheat	cytosol	54.04	53.18
TraesCS2D01G589800.1	Wheat	cytosol	53.94	53.08
TraesCS2B01G609200.1	Wheat	cytosol	53.85	52.99
HORVU2Hr1G124270.22	Barley	cytosol, mitochondrion, nucleus	53.85	52.7
CDX69686	Canola	nucleus	51.0	50.19
CDX85076	Canola	cytosol	49.38	50.1
CDY12764	Canola	cytosol	49.76	50.0
CDX85690	Canola	nucleus	50.52	49.72
CDX91165	Canola	nucleus	50.52	49.58
CDX97187	Canola	nucleus	49.48	49.24
CDX92532	Canola	nucleus	50.62	47.85
CDX88891	Canola	cytosol, mitochondrion, nucleus	51.0	47.31
CDX87986	Canola	cytosol	9.21	47.09
CDY13998	Canola	nucleus	49.67	46.86
CDX70876	Canola	cytosol	49.57	46.82
CDX77534	Canola	cytosol	49.19	46.62
CDY49416	Canola	cytosol	49.48	46.56
CDY28580	Canola	plasma membrane	41.22	41.57
CDY44086	Canola	plasma membrane, vacuole	41.5	41.54
CDX77871	Canola	cytosol	35.99	39.94
CDY21795	Canola	cytosol	36.09	39.71
CDY31624	Canola	cytosol	34.76	37.23
CDX87989	Canola	cytosol	34.57	36.33
CDY43762	Canola	cytosol	14.34	35.28
CDY31347	Canola	cytosol	14.53	35.09
CDX81201	Canola	cytosol	14.53	34.77
CDY60046	Canola	cytosol	14.72	34.6
CDX84451	Canola	cytosol	14.53	34.3
CDY39843	Canola	cytosol	12.92	33.66
CDY46423	Canola	cytosol	10.45	29.02
CDY16215	Canola	cytosol	10.54	28.76
CDY69131	Canola	cytosol	8.74	28.66
CDY44785	Canola	mitochondrion	11.59	28.18
CDY34733	Canola	cytosol	8.83	27.76
CDY57523	Canola	cytosol	12.35	27.6
CDY40735	Canola	mitochondrion	11.4	27.46
CDY43240	Canola	cytosol	12.25	27.33
CDX69479	Canola	cytosol	10.16	26.95
CDY26488	Canola	cytosol	10.07	26.63
CDX97668	Canola	cytosol	11.97	26.42
CDY56827	Canola	cytosol	11.97	26.42
CDX96062	Canola	plastid	12.73	25.87
CDY04192	Canola	cytosol	12.06	25.81
CDY39172	Canola	cytosol	12.06	25.81
CDY56518	Canola	cytosol, plastid	12.63	25.58
CDY01845	Canola	plastid	12.54	25.53
CDY02190	Canola	mitochondrion	10.64	25.28
CDY51633	Canola	mitochondrion	10.64	25.23
CDY28863	Canola	cytosol	12.44	25.19
CDX99731	Canola	cytosol, plastid	12.44	24.49
CDX83586	Canola	cytosol, plastid	12.25	24.39
CDY13609	Canola	cytosol	12.25	24.39
CDY40988	Canola	cytosol, plastid	11.87	22.77
CDY14709	Canola	nucleus	11.02	16.79
CDY20113	Canola	endoplasmic reticulum, extracellular	11.78	15.03
CDY21840	Canola	endoplasmic reticulum, extracellular	11.78	15.01

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078FEB4	UniProt:A0A078FEB4
InterPro:BRX_N	InterPro:Brevis_radix_dom	EnsemblPlants:CDY11586	ProteinID:CDY11586	ProteinID:CDY11586.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00049700001	InterPro:IPR000408	InterPro:IPR001849
InterPro:IPR009091	InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR013591	InterPro:IPR017455	PFAM:PF00415
PFAM:PF01363	PFAM:PF08381	PFAM:PF13713	PFAM:PF16457	InterPro:PH-like_dom_sf	InterPro:PH_domain
PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870
PANTHER:PTHR22870:SF91	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985
SUPFAM:SSF57903	UniParc:UPI0004EEBC7B	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

BnaC06g31530DBnaC06g31530D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FEB4]

Coordinates

chrLK032012:-:290986..295782

Molecular Weight (calculated)

113848.0 Da

IEP (calculated)

9.219

GRAVY (calculated)

-0.431

Length

1053 amino acids

Sequence
(BLAST)

0001: MADLVSYGSI ERDIEQALIA LKKGAQLLKY GRKGKPKFCP FRLSNDETSL IWISNGGEKR LKLSTVSKIV PGQRTAVFQR YLRPDKDYLS FSLIYSNRKR
0101: TLDVICKDKV EAEVWIAGLK ALISGQGGRA KIDGWSDGLS IADSRDLTLG SPTNSSVCAS RDFNSVDVPY ASTAFSKSIR TENSVSSERS HVPSGSPNMS
0201: VRGPSTDVFR VSVSSAQSTT SSHGSGPDDR DALGDVYLWG EVPSDKNASS KSNVLIPKPL ESNVVLDVHQ VACGVKHAAL VSRQGEVFTW GEESGGRLGH
0301: GMGKDVTGGP PQLVESLAVS SVDFVACGEF HTCAVTMNGE IYTWGDGTHN AGLLGHGTDV SHWIPKRISG PLEGLRIASV SCGPWHTALI TSTGQLFTFG
0401: DGTFGVLGHG DREAVFYPRE VKSLSGLKTI AVACGVWHAA AVVEVSSSVS SGKLFTWGDG DKGRLGHGDN ETRLKPTCVS SLIDNDFHKV ACGHSLTVGL
0501: TTSGKVFTMG STVYGQLGNP TADGKLPCLA SNDSVEEVAC GAYHVAVLTS RNEVFTWGKG ANGRLGHGDV EDRNAPTLVE ALKERHVKYI ACGANFTAAI
0601: CLHKWASGAE QTQCSACKQA FGFTKKSHNC YNCGLVHCHS CSSKKSLKAS LAPNPGKPYR VCDSCYSKLS KASEASSVMP RLSGENKDRL DKAELRLAKS
0701: GIPSKIDLIK QLDSRAARQG RKGETFSLVR TSQTPLLQLR DALSNVADLR RVPPKPAVAV TPSGGNSRSV SPFSRRSSPT RSVTPIPSMA GIGFSTSVTE
0801: SLKKTNELLN QEVVRLRAQA ESLRQRCEVQ ELEVQKSLKK AQEAMKQASE ESAKSEAAKE VIKSLTTQLK DIVKLLPPGA HEAETARTTN LLKGFEQNGI
0901: HFANAKGQRS SRSDSVSDTP LTSPLTPPSR SMNGLWRSSQ SPRNTDELQS DGVRISNGFS EDGDTRRNSR SSVATSNASQ VEAEWIEQYE PGVYITLLAL
1001: GDGTRDLKRV RFSRRRFKEQ QAEAWWTENR ERVYEKYNIR GTDRPSVQSQ FQT

Best Arabidopsis Sequence Match ( AT5G42140.1 )
(BLAST)

0001: MADLVSYGNV VRDIEQALIA LKKGAQLLKY GRKGKPKFCP FRLSNDETSL IWISNGGEKR LKLATVSKIV PGQRTAVFQR YLRPDKDYLS FSLIYSNRKR
0101: TLDLICKDKV EAEVWIAGLK ALISGQAGRS KIDGWSDGGL SIADSRDLTL SSPTNSSVCA SRDFNIADSP YNSTNFPRTS RTENSVSSER SHVASDSPNM
0201: LVRGTGSDAF RVSVSSVQSS SSHGSAPDDC DALGDVYIWG EVLCENVTKF GADKNIGYLG SRSDVLIPKP LESNVVLDVH HIACGVKHAA LVSRQGEVFT
0301: WGEASGGRLG HGMGKDVTGP QLIESLAATS IDFVACGEFH TCAVTMTGEI YTWGDGTHNA GLLGHGTDVS HWIPKRISGP LEGLQIASVS CGPWHTALIT
0401: STGQLFTFGD GTFGVLGHGD KETVFYPREV ESLSGLRTIA VACGVWHAAA IVEVIVTHSS SSVSSGKLFT WGDGDKSRLG HGDKEPRLKP TCVSALIDHT
0501: FHRVACGHSL TVGLTTSGKV YTMGSTVYGQ LGNPNADGKL PCLVEDKLTK DCVEEIACGA YHVAVLTSRN EVFTWGKGAN GRLGHGDVED RKAPTLVDAL
0601: KERHVKNIAC GSNFTAAICL HKWVSGTEQS QCSACRQAFG FTRKRHNCYN CGLVHCHSCS SKKSLKAALA PNPGKPYRVC DSCHSKLSKV SEANIDSRKN
0701: VMPRLSGENK DRLDKTEIRL AKSGIPSNID LIKQLDNRAA RQGKKADTFS LVRTSQTPLT QLKDALTNVA DLRRGPPKPA VTPSSSRPVS PFSRRSSPPR
0801: SVTPIPLNVG LGFSTSIAES LKKTNELLNQ EVVRLRAQAE SLRHRCEVQE FEVQKSVKKV QEAMSLAAEE SAKSEAAKEV IKSLTAQVKD IAALLPPGAY
0901: EAETTRTANL LNGFEQNGFH FTNANGQRQS RSDSMSDTSL ASPLAMPARS MNGLWRNSQS PRNTDASMGE LLSEGVRISN GFSEDGRNSR SSAASASNAS
1001: QVEAEWIEQY EPGVYITLLA LGDGTRDLKR VRFSRRRFRE QQAETWWSEN RERVYEKYNI RGTDRSSVAT SPISQSQF

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain [Source:TAIR;Acc:AT5G42140]
SUBAcon: [cytosol,endoplasmic reticulum,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.