Factsheet for PGSC0003DMT400002081

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g071040.2.1	Tomato	cytosol	99.11	99.11
KRH08750	Soybean	cytosol	46.09	81.48
VIT_18s0166g00210.t01	Wine grape	cytosol	80.64	80.43
KRH35179	Soybean	cytosol	78.24	78.66
KRG91629	Soybean	cytosol	76.55	78.51
KRH70333	Soybean	cytosol	76.02	76.43
CDY70949	Canola	cytosol	23.8	75.71
AT5G42140.2	Thale cress	cytosol, endoplasmic reticulum, nucleus	69.63	72.73
AT1G76950.1	Thale cress	cytosol	70.87	72.35
KRH08736	Soybean	endoplasmic reticulum	44.49	71.88
KRH30228	Soybean	cytosol	25.84	71.5
Bra003698.1-P	Field mustard	mitochondrion	68.12	71.22
CDY48550	Canola	cytosol	61.28	70.41
CDX88324	Canola	cytosol	66.25	70.31
CDY11586	Canola	cytosol	65.72	70.28
CDY47138	Canola	cytosol	65.19	70.11
CDX87557	Canola	cytosol	66.79	70.08
Bra015708.1-P	Field mustard	cytosol	66.79	70.02
Bra016214.1-P	Field mustard	cytosol	65.28	70.0
CDX68076	Canola	cytosol	51.24	69.52
Os01t0964800-01	Rice	mitochondrion	35.08	68.22
KRH30227	Soybean	cytosol	26.91	67.18
GSMUA_Achr2P20470_001	Banana	endoplasmic reticulum, plasma membrane	58.7	66.97
KXG34192	Sorghum	cytosol	52.75	65.13
Zm00001d011805_P001	Maize	cytosol	52.49	64.8
HORVU3Hr1G112690.2	Barley	cytosol, plastid	51.42	63.77
HORVU1Hr1G002740.1	Barley	cytosol, mitochondrion, nucleus, plastid	51.15	63.51
GSMUA_Achr8P07850_001	Banana	cytosol	62.17	63.35
TraesCS3A01G512900.1	Wheat	cytosol	51.24	63.34
TraesCS1A01G020400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	50.89	63.18
TraesCS1D01G019900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	50.98	63.15
Zm00001d006773_P001	Maize	cytosol	22.56	63.03
GSMUA_Achr6P13030_001	Banana	endoplasmic reticulum	54.8	63.02
TraesCS1B01G024400.1	Wheat	cytosol, mitochondrion, nucleus	50.71	62.95
EES18851	Sorghum	cytosol, plastid	51.15	62.88
TraesCS3D01G522600.2	Wheat	cytosol	48.49	62.83
TraesCS3B01G581600.2	Wheat	cytosol	50.8	62.72
Zm00001d035723_P001	Maize	cytosol, mitochondrion, nucleus, plastid	50.98	62.6
Os05t0106700-00	Rice	mitochondrion	51.33	61.49
EES13137	Sorghum	cytosol	55.95	59.21
GSMUA_AchrUn_...	Banana	nucleus	60.48	59.06
Os04t0686200-01	Rice	plasma membrane	55.33	58.94
TraesCS2D01G589800.1	Wheat	cytosol	54.88	57.76
TraesCS2B01G609200.1	Wheat	cytosol	54.62	57.48
TraesCS2A01G581400.1	Wheat	cytosol	54.62	57.48
Zm00001d002876_P001	Maize	mitochondrion	55.33	57.31
HORVU2Hr1G124270.22	Barley	cytosol, mitochondrion, nucleus	54.62	57.16
HORVU3Hr1G108180.1	Barley	mitochondrion	8.35	56.29
PGSC0003DMT400034994	Potato	cytosol	47.96	52.17
PGSC0003DMT400059356	Potato	cytosol	42.1	45.97
PGSC0003DMT400001620	Potato	cytosol	13.59	38.25
PGSC0003DMT400043094	Potato	nucleus	34.64	36.25
PGSC0003DMT400032945	Potato	extracellular	9.86	28.39
PGSC0003DMT400003817	Potato	cytosol	9.33	27.49
PGSC0003DMT400032346	Potato	plasma membrane	11.37	26.56
PGSC0003DMT400045467	Potato	cytosol	9.33	26.45
PGSC0003DMT400003726	Potato	cytosol	10.48	25.32
PGSC0003DMT400027900	Potato	cytosol	11.46	24.2
PGSC0003DMT400016865	Potato	cytosol, extracellular, plastid	3.55	23.12

Protein Annotations

EntrezGene:102604257	Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	InterPro:BRX_N
InterPro:Brevis_radix_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000408
InterPro:IPR001849	InterPro:IPR009091	InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR013591	InterPro:IPR017455
UniProt:M0ZJK8	PFAM:PF00415	PFAM:PF01363	PFAM:PF08381	PFAM:PF13713	PFAM:PF16457
EnsemblPlantsGene:PGSC0003DMG400000792	PGSC:PGSC0003DMG400000792	EnsemblPlants:PGSC0003DMT400002081	InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00633
ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF91
InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903
UniParc:UPI00029628B3	RefSeq:XP_006362814.1	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD
SEG:seg	:	:	:	:	:

Description

Ran GTPase binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000792]

Coordinates

chr4:-:58908299..58917686

Molecular Weight (calculated)

122344.0 Da

IEP (calculated)

8.286

GRAVY (calculated)

-0.457

Length

1126 amino acids

Sequence
(BLAST)

0001: MADLVSYGDA DRDIEQALIA LKKGAQLLKY GRKGKPKFYP FRLSNDELSL VWISSSGEKS LKLASVSRII PGQRTAVFRR YLRPEKDYLS FSLIYNYGKR
0101: SLDLICKDKV EAEFWITGLK ALISSGQGGR SKVDGWSDGG LYFDDSRDLT SNSPSSSSVS ATKEISSPDA SLSSNPNTSP KSHQPYNFVQ SERSHVALDQ
0201: ANMQNIQAKG SASDVFRVSV SSAPSTSSHG SAPDDCDALG DVYIWGEVIC DNIVKVGPEK NSSTVSTRAD VLVPRPLESN VVLDVHHIAC GVKHAALVTR
0301: QGEIFTWGEE SGGRLGHGVG KDVTQPRFVE SLSLCNIDFV ACGEFHTCAV TMAGELYTWG DGTHNAGLLG NGTDVSHWIP KRISGPLEGL QVASVTCGPW
0401: HTALITSTGQ LFTFGDGTFG VLGHGDRENV LFPREVKSLS GLRTIAAACG VWHTAAVVEV IVTQSSASVS SGKLFTWGDG DKNRLGHGDK EPRLEPTCVP
0501: ALIDYNFHKI ACGHSLTVCL TTSGHVFTMG STVYGQLGNP YSDGKLPCLV EDKLLGEIVE DIACGSYHVA VLTSKNEVYT WGKGANGRLG HGDVEDRKAP
0601: TLVEALKDRH VKYISCGSNY TAAICLHKWV SGAEQSQCSA CRQAFGFTRK RHNCYNCGLV HCHACTSRKA IRAALAPNPN KPYRVCDSCF TKLSKVAEIG
0701: INNRRSAGPR LSGENKDRLD KADIRSAKSG MPPNIDLIKQ LDSKAVKQGK KADTFSLGRS SQAPLLQLKD VVSTTGDLRW AVPKPVMIQS GVSSRSVSPF
0801: SRKPSPPRSA TPVPTTAGLS FSKSIADSLK KTNELLNQEV HKLRAQVENL RHRCELQESE LQKSTKKAQE AMALAAEESA KSKAAKEAMK SLMAQLKDMA
0901: ERLPPGAYDV ESLKLAYLPN GLDSNGIHYP DANGERHSRS DSVTSSYMAS QTSMDFSTYG MQSPTRYQRD SGSIEAITNN QILTSNGTDD RGEVRLPNGS
1001: EAQVNINSAS QAVDNEDAES LQDNGNGLKS RNSLPSGNPN QIEAEWIEQY EPGVYITLMA LRDGTRDLKR VRFSRRRFGE HQAETWWSEN RDKVYERYNV
1101: RGSDKSSVTG QAARRSEGGL SPSSQI

Best Arabidopsis Sequence Match ( AT5G42140.1 )
(BLAST)

0001: MADLVSYGNV VRDIEQALIA LKKGAQLLKY GRKGKPKFCP FRLSNDETSL IWISNGGEKR LKLATVSKIV PGQRTAVFQR YLRPDKDYLS FSLIYSNRKR
0101: TLDLICKDKV EAEVWIAGLK ALISGQAGRS KIDGWSDGGL SIADSRDLTL SSPTNSSVCA SRDFNIADSP YNSTNFPRTS RTENSVSSER SHVASDSPNM
0201: LVRGTGSDAF RVSVSSVQSS SSHGSAPDDC DALGDVYIWG EVLCENVTKF GADKNIGYLG SRSDVLIPKP LESNVVLDVH HIACGVKHAA LVSRQGEVFT
0301: WGEASGGRLG HGMGKDVTGP QLIESLAATS IDFVACGEFH TCAVTMTGEI YTWGDGTHNA GLLGHGTDVS HWIPKRISGP LEGLQIASVS CGPWHTALIT
0401: STGQLFTFGD GTFGVLGHGD KETVFYPREV ESLSGLRTIA VACGVWHAAA IVEVIVTHSS SSVSSGKLFT WGDGDKSRLG HGDKEPRLKP TCVSALIDHT
0501: FHRVACGHSL TVGLTTSGKV YTMGSTVYGQ LGNPNADGKL PCLVEDKLTK DCVEEIACGA YHVAVLTSRN EVFTWGKGAN GRLGHGDVED RKAPTLVDAL
0601: KERHVKNIAC GSNFTAAICL HKWVSGTEQS QCSACRQAFG FTRKRHNCYN CGLVHCHSCS SKKSLKAALA PNPGKPYRVC DSCHSKLSKV SEANIDSRKN
0701: VMPRLSGENK DRLDKTEIRL AKSGIPSNID LIKQLDNRAA RQGKKADTFS LVRTSQTPLT QLKDALTNVA DLRRGPPKPA VTPSSSRPVS PFSRRSSPPR
0801: SVTPIPLNVG LGFSTSIAES LKKTNELLNQ EVVRLRAQAE SLRHRCEVQE FEVQKSVKKV QEAMSLAAEE SAKSEAAKEV IKSLTAQVKD IAALLPPGAY
0901: EAETTRTANL LNGFEQNGFH FTNANGQRQS RSDSMSDTSL ASPLAMPARS MNGLWRNSQS PRNTDASMGE LLSEGVRISN GFSEDGRNSR SSAASASNAS
1001: QVEAEWIEQY EPGVYITLLA LGDGTRDLKR VRFSRRRFRE QQAETWWSEN RERVYEKYNI RGTDRSSVAT SPISQSQF

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain [Source:TAIR;Acc:AT5G42140]
SUBAcon: [cytosol,endoplasmic reticulum,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.