Factsheet for AT5G42140.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, endoplasmic reticulum

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016214.1-P	Field mustard	cytosol	84.14	86.38
CDY47138	Canola	cytosol	83.86	86.34
CDY11586	Canola	cytosol	84.32	86.32
KRH08750	Soybean	cytosol	45.18	76.45
VIT_18s0166g00210.t01	Wine grape	cytosol	75.7	72.28
KRG91629	Soybean	cytosol	71.99	70.67
KRH35179	Soybean	cytosol	72.82	70.09
PGSC0003DMT400002081	Potato	cytosol	72.73	69.63
Solyc04g071040.2.1	Tomato	cytosol	72.63	69.54
KRH70333	Soybean	cytosol	72.17	69.46
KRH30228	Soybean	cytosol	26.16	69.29
AT1G76950.1	Thale cress	cytosol	70.22	68.63
KRH08736	Soybean	endoplasmic reticulum	42.21	65.28
Os01t0964800-01	Rice	mitochondrion	34.79	64.77
KRH30227	Soybean	cytosol	25.79	61.64
GSMUA_Achr2P20470_001	Banana	endoplasmic reticulum, plasma membrane	56.22	61.4
HORVU1Hr1G002740.1	Barley	cytosol, mitochondrion, nucleus, plastid	51.21	60.86
TraesCS1A01G020400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	51.11	60.75
TraesCS1D01G019900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	51.11	60.62
GSMUA_Achr8P07850_001	Banana	cytosol	62.06	60.54
TraesCS1B01G024400.1	Wheat	cytosol, mitochondrion, nucleus	50.93	60.53
KXG34192	Sorghum	cytosol	51.21	60.53
Zm00001d011805_P001	Maize	cytosol	51.02	60.31
HORVU3Hr1G112690.2	Barley	cytosol, plastid	50.28	59.69
Zm00001d006773_P001	Maize	cytosol	22.26	59.55
TraesCS3D01G522600.2	Wheat	cytosol	47.96	59.49
EES18851	Sorghum	cytosol, plastid	50.28	59.17
TraesCS3A01G512900.1	Wheat	cytosol	50.0	59.17
Zm00001d035723_P001	Maize	cytosol, mitochondrion, nucleus, plastid	50.19	59.0
GSMUA_Achr6P13030_001	Banana	endoplasmic reticulum	53.34	58.73
TraesCS3B01G581600.2	Wheat	cytosol	49.54	58.55
Os05t0106700-00	Rice	mitochondrion	50.74	58.19
Os04t0686200-01	Rice	plasma membrane	55.57	56.67
EES13137	Sorghum	cytosol	55.19	55.92
GSMUA_AchrUn_...	Banana	nucleus	59.0	55.16
TraesCS2A01G581400.1	Wheat	cytosol	54.64	55.05
TraesCS2B01G609200.1	Wheat	cytosol	54.64	55.05
TraesCS2D01G589800.1	Wheat	cytosol	54.45	54.86
HORVU2Hr1G124270.22	Barley	cytosol, mitochondrion, nucleus	54.55	54.65
Zm00001d002876_P001	Maize	mitochondrion	54.73	54.28
HORVU3Hr1G108180.1	Barley	mitochondrion	8.35	53.89
AT5G12350.1	Thale cress	nucleus	51.86	52.0
AT3G23270.2	Thale cress	cytosol	48.79	49.91
AT5G19420.2	Thale cress	mitochondrion	52.13	49.34
AT4G14368.1	Thale cress	cytosol	48.61	47.38
AT1G69710.1	Thale cress	cytosol	41.28	42.75
AT1G65920.1	Thale cress	cytosol	34.88	37.38
AT3G47660.4	Thale cress	cytosol	33.86	36.87
AT5G63860.1	Thale cress	cytosol	14.29	35.0
AT1G27060.1	Thale cress	cytosol	11.13	31.09
AT5G08710.1	Thale cress	mitochondrion	11.69	29.03
AT5G16040.1	Thale cress	cytosol	10.3	28.03
AT3G02510.1	Thale cress	cytosol	10.02	27.48
AT3G15430.2	Thale cress	cytosol	11.87	26.23
AT3G02300.2	Thale cress	cytosol	11.32	25.31
AT3G26100.5	Thale cress	cytosol, plastid	12.24	24.81
AT5G60870.2	Thale cress	mitochondrion	10.2	24.34

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	EntrezGene:834219	UniProt:A0A1P8BCA2
ProteinID:AED94772.2	ProteinID:ANM69229.1	ArrayExpress:AT5G42140	EnsemblPlantsGene:AT5G42140	RefSeq:AT5G42140	TAIR:AT5G42140
RefSeq:AT5G42140-TAIR-G	EnsemblPlants:AT5G42140.2	Unigene:At.28039	InterPro:BRX_N	InterPro:Brevis_radix_dom	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000408	InterPro:IPR001849	InterPro:IPR009091
InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR013591	InterPro:IPR017455	RefSeq:NP_001318728.1	RefSeq:NP_001330926.1
PFAM:PF00415	PFAM:PF01363	PFAM:PF08381	PFAM:PF13713	PFAM:PF16457	InterPro:PH-like_dom_sf
InterPro:PH_domain	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50178	PFscan:PS51514
PANTHER:PTHR22870	PANTHER:PTHR22870:SF91	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729
SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI0008491CE2	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain [Source:TAIR;Acc:AT5G42140]

Coordinates

chr5:-:16837332..16842493

Molecular Weight (calculated)

116958.0 Da

IEP (calculated)

8.835

GRAVY (calculated)

-0.388

Length

1078 amino acids

Sequence
(BLAST)

0001: MADLVSYGNV VRDIEQALIA LKKGAQLLKY GRKGKPKFCP FRLSNDETSL IWISNGGEKR LKLATVSKIV PGQRTAVFQR YLRPDKDYLS FSLIYSNRKR
0101: TLDLICKDKV EAEVWIAGLK ALISGQAGRS KIDGWSDGGL SIADSRDLTL SSPTNSSVCA SRDFNIADSP YNSTNFPRTS RTENSVSSER SHVASDSPNM
0201: LVRGTGSDAF RVSVSSVQSS SSHGSAPDDC DALGDVYIWG EVLCENVTKF GADKNIGYLG SRSDVLIPKP LESNVVLDVH HIACGVKHAA LVSRQGEVFT
0301: WGEASGGRLG HGMGKDVTGP QLIESLAATS IDFVACGEFH TCAVTMTGEI YTWGDGTHNA GLLGHGTDVS HWIPKRISGP LEGLQIASVS CGPWHTALIT
0401: STGQLFTFGD GTFGVLGHGD KETVFYPREV ESLSGLRTIA VACGVWHAAA IVEVIVTHSS SSVSSGKLFT WGDGDKSRLG HGDKEPRLKP TCVSALIDHT
0501: FHRVACGHSL TVGLTTSGKV YTMGSTVYGQ LGNPNADGKL PCLVEDKLTK DCVEEIACGA YHVAVLTSRN EVFTWGKGAN GRLGHGDVED RKAPTLVDAL
0601: KERHVKNIAC GSNFTAAICL HKWVSGTEQS QCSACRQAFG FTRKRHNCYN CGLVHCHSCS SKKSLKAALA PNPGKPYRVC DSCHSKLSKV SEANIDSRKN
0701: VMPRLSGENK DRLDKTEIRL AKSGIPSNID LIKQLDNRAA RQGKKADTFS LVRTSQTPLT QLKDALTNVA DLRRGPPKPA VTPSSSRPVS PFSRRSSPPR
0801: SVTPIPLNVG LGFSTSIAES LKKTNELLNQ EVVRLRAQAE SLRHRCEVQE FEVQKSVKKV QEAMSLAAEE SAKSEAAKEV IKSLTAQVKD IAALLPPGAY
0901: EAETTRTANL LNGFEQNGFH FTNANGQRQS RSDSMSDTSL ASPLAMPARS MNGLWRNSQS PRNTDASMGE LLSEGVRISN GFSEDGRNSR SSAASASNAS
1001: QVEAEWIEQY EPGVYITLLA LGDGTRDLKR VRFSRRRFRE QQAETWWSEN RERVYEKYNI RGTDRSSVAT SPISQSQF

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.