Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol, nucleus, mitochondrion
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- plastid 1
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1B01G024400.1 | Wheat | cytosol, mitochondrion, nucleus | 98.13 | 98.13 |
| TraesCS1D01G019900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 98.02 | 97.8 |
| HORVU1Hr1G002740.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 96.91 | 96.91 |
| EES18851 | Sorghum | cytosol, plastid | 84.67 | 83.84 |
| Zm00001d035723_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 83.68 | 82.77 |
| Os05t0106700-00 | Rice | mitochondrion | 85.78 | 82.77 |
| TraesCS3A01G512900.1 | Wheat | cytosol | 75.96 | 75.63 |
| KRH08736 | Soybean | endoplasmic reticulum | 45.42 | 59.11 |
| GSMUA_Achr6P13030_001 | Banana | endoplasmic reticulum | 59.21 | 54.85 |
| CDY48550 | Canola | cytosol | 58.65 | 54.29 |
| VIT_18s0166g00210.t01 | Wine grape | cytosol | 65.16 | 52.35 |
| KRG91629 | Soybean | cytosol | 63.06 | 52.09 |
| KRH35179 | Soybean | cytosol | 63.62 | 51.52 |
| AT5G42140.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 60.75 | 51.11 |
| KRH30227 | Soybean | cytosol | 25.36 | 51.0 |
| GSMUA_Achr2P20470_001 | Banana | endoplasmic reticulum, plasma membrane | 55.46 | 50.96 |
| Solyc04g071040.2.1 | Tomato | cytosol | 63.18 | 50.89 |
| PGSC0003DMT400002081 | Potato | cytosol | 63.18 | 50.89 |
| CDY47138 | Canola | cytosol | 58.65 | 50.81 |
| KRH70333 | Soybean | cytosol | 62.29 | 50.45 |
| Bra016214.1-P | Field mustard | cytosol | 58.32 | 50.38 |
| CDY11586 | Canola | cytosol | 58.32 | 50.24 |
| AT1G76950.1 | Thale cress | cytosol | 60.86 | 50.05 |
| Bra003698.1-P | Field mustard | mitochondrion | 59.32 | 49.95 |
| KRH08750 | Soybean | cytosol | 34.84 | 49.61 |
| CDX87557 | Canola | cytosol | 58.32 | 49.3 |
| Bra015708.1-P | Field mustard | cytosol | 58.32 | 49.26 |
| CDX88324 | Canola | cytosol | 57.44 | 49.1 |
| KRH30228 | Soybean | cytosol | 20.84 | 46.44 |
| TraesCS2A01G581400.1 | Wheat | cytosol | 54.13 | 45.89 |
| CDX68076 | Canola | cytosol | 40.13 | 43.86 |
| TraesCS1A01G366800.1 | Wheat | cytosol | 45.76 | 39.75 |
| TraesCS1A01G240600.2 | Wheat | cytosol | 47.74 | 39.47 |
| TraesCS7A01G185400.1 | Wheat | cytosol | 38.48 | 34.49 |
| TraesCS2A01G306400.3 | Wheat | cytosol | 14.99 | 30.7 |
| TraesCS6A01G261000.1 | Wheat | cytosol | 29.88 | 29.68 |
| CDY70949 | Canola | cytosol | 11.47 | 29.38 |
| TraesCS2A01G456700.1 | Wheat | cytosol, nucleus, peroxisome | 33.63 | 28.99 |
| TraesCS6A01G153100.1 | Wheat | golgi | 14.55 | 28.09 |
| TraesCS7A01G284800.1 | Wheat | cytosol | 12.13 | 27.57 |
| TraesCS5A01G364400.2 | Wheat | mitochondrion | 13.01 | 26.94 |
| TraesCS1A01G076400.1 | Wheat | mitochondrion | 12.24 | 26.49 |
| TraesCS5A01G173400.1 | Wheat | cytosol | 12.79 | 24.22 |
| TraesCS3A01G319000.1 | Wheat | cytosol | 10.92 | 24.15 |
| TraesCS2A01G236300.4 | Wheat | cytosol | 12.35 | 22.81 |
Protein Annotations
| Gene3D:2.130.10.30 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:BRX_N | InterPro:Brevis_radix_dom | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000408 | InterPro:IPR009091 | InterPro:IPR013083 |
| InterPro:IPR013591 | InterPro:IPR017455 | PFAM:PF00415 | PFAM:PF01363 | PFAM:PF08381 | PFAM:PF13713 |
| PRINTS:PR00633 | ScanProsite:PS00626 | PFscan:PS50012 | PFscan:PS50178 | PFscan:PS51514 | PANTHER:PTHR22870 |
| PANTHER:PTHR22870:SF199 | InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens | SMART:SM00064 | SUPFAM:SSF50985 | SUPFAM:SSF57903 |
| EnsemblPlantsGene:TraesCS1A01G020400 | EnsemblPlants:TraesCS1A01G020400.1 | InterPro:Znf_FYVE | InterPro:Znf_FYVE-rel | InterPro:Znf_FYVE_PHD | InterPro:Znf_RING/FYVE/PHD |
| TIGR:cd00065 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1A:-:10052200..10055927
Molecular Weight (calculated)
98255.2 Da
IEP (calculated)
8.455
GRAVY (calculated)
-0.465
Length
907 amino acids
Sequence
(BLAST)
(BLAST)
001: MYTKGPPLDV LRASISSAPS TSSHGSAQDD CDSLGDVYVW GEVVCDNSAR TSSDTVIRST GKTDFLLPKP LESNLVLDVY HVDCGVRHAS LVTRNGEVFT
101: WGEDSGGRLG HGTREDSVHP RLVESLAACN IDFVACGEFH TCAVTTTGEL YTWGDGTHNV GLLGHGTDVG HWIPRRISGP LEGLQIAYVS CGTWHTALIT
201: SMGQLFTFGD GSFGVLGHGD LKSISCPREV ESLSGLKTIA VACGVWHTAA IVEVIVTQSS ATVSAGKLFT WGDGDKHRLG HGDKEARLKP TCVASLIDYD
301: FYRVACGHSL TVGLTTSGKV WTMGNSVYGQ LGNLNSDGRP CLVEDKIASE HVLQIACGSY HVAVLTSRSE VFTWGKGANG RLGHGDIEDR KVPTTVEALR
401: DRAVRHIACG ANFTAAICLH KWVSGADQSQ CSSCRQPFGF TRKRHNCYNC GLVHCNACTS RKALRAALAP SPGKLHRVCD SCYSKLKNAS SSANKKDLAP
501: GESNGEARVG KSILSSNMDM IRSLDSKAAK QGKKTDALSF LRNPQVSSLL QLRDIAFSGG ADPNRPAVPR AARTPAARSV TSSRAVSPFS RRSSPPRSTT
601: PVPTTHGLSL SKSATDNLVK ANELLSQEVE RLRAQVDSLR NRCDHHELEL HKSAKKVQEA MTLVAEESAK SKAAKEVIKS LTAQLKDMAE RLPPEHGAYD
701: FNEAKLVHVP NGVEPHVATY SSMNGKVHQA RNELLNAPSP NSGRSPHSNG GISNQHKLLG NISENSEGST HSLRITSPHG SDRPHRRAHS NSDEMLSASS
801: RGDDNVSIDA RSLQNGDDSY KPRGTISISS NQVQAEWIEQ YEPGVYITLT TLRDGTRDLK RVRFSRRRFG EHQAENWWNE NREKVYEKYN VRSSERVSSA
901: ASTRSAY
101: WGEDSGGRLG HGTREDSVHP RLVESLAACN IDFVACGEFH TCAVTTTGEL YTWGDGTHNV GLLGHGTDVG HWIPRRISGP LEGLQIAYVS CGTWHTALIT
201: SMGQLFTFGD GSFGVLGHGD LKSISCPREV ESLSGLKTIA VACGVWHTAA IVEVIVTQSS ATVSAGKLFT WGDGDKHRLG HGDKEARLKP TCVASLIDYD
301: FYRVACGHSL TVGLTTSGKV WTMGNSVYGQ LGNLNSDGRP CLVEDKIASE HVLQIACGSY HVAVLTSRSE VFTWGKGANG RLGHGDIEDR KVPTTVEALR
401: DRAVRHIACG ANFTAAICLH KWVSGADQSQ CSSCRQPFGF TRKRHNCYNC GLVHCNACTS RKALRAALAP SPGKLHRVCD SCYSKLKNAS SSANKKDLAP
501: GESNGEARVG KSILSSNMDM IRSLDSKAAK QGKKTDALSF LRNPQVSSLL QLRDIAFSGG ADPNRPAVPR AARTPAARSV TSSRAVSPFS RRSSPPRSTT
601: PVPTTHGLSL SKSATDNLVK ANELLSQEVE RLRAQVDSLR NRCDHHELEL HKSAKKVQEA MTLVAEESAK SKAAKEVIKS LTAQLKDMAE RLPPEHGAYD
701: FNEAKLVHVP NGVEPHVATY SSMNGKVHQA RNELLNAPSP NSGRSPHSNG GISNQHKLLG NISENSEGST HSLRITSPHG SDRPHRRAHS NSDEMLSASS
801: RGDDNVSIDA RSLQNGDDSY KPRGTISISS NQVQAEWIEQ YEPGVYITLT TLRDGTRDLK RVRFSRRRFG EHQAENWWNE NREKVYEKYN VRSSERVSSA
901: ASTRSAY
0001: MADLVSYGNV VRDIEQALIA LKKGAQLLKY GRKGKPKFCP FRLSNDETSL IWISNGGEKR LKLATVSKIV PGQRTAVFQR YLRPDKDYLS FSLIYSNRKR
0101: TLDLICKDKV EAEVWIAGLK ALISGQAGRS KIDGWSDGGL SIADSRDLTL SSPTNSSVCA SRDFNIADSP YNSTNFPRTS RTENSVSSER SHVASDSPNM
0201: LVRGTGSDAF RVSVSSVQSS SSHGSAPDDC DALGDVYIWG EVLCENVTKF GADKNIGYLG SRSDVLIPKP LESNVVLDVH HIACGVKHAA LVSRQGEVFT
0301: WGEASGGRLG HGMGKDVTGP QLIESLAATS IDFVACGEFH TCAVTMTGEI YTWGDGTHNA GLLGHGTDVS HWIPKRISGP LEGLQIASVS CGPWHTALIT
0401: STGQLFTFGD GTFGVLGHGD KETVFYPREV ESLSGLRTIA VACGVWHAAA IVEVIVTHSS SSVSSGKLFT WGDGDKSRLG HGDKEPRLKP TCVSALIDHT
0501: FHRVACGHSL TVGLTTSGKV YTMGSTVYGQ LGNPNADGKL PCLVEDKLTK DCVEEIACGA YHVAVLTSRN EVFTWGKGAN GRLGHGDVED RKAPTLVDAL
0601: KERHVKNIAC GSNFTAAICL HKWVSGTEQS QCSACRQAFG FTRKRHNCYN CGLVHCHSCS SKKSLKAALA PNPGKPYRVC DSCHSKLSKV SEANIDSRKN
0701: VMPRLSGENK DRLDKTEIRL AKSGIPSNID LIKQLDNRAA RQGKKADTFS LVRTSQTPLT QLKDALTNVA DLRRGPPKPA VTPSSSRPVS PFSRRSSPPR
0801: SVTPIPLNVG LGFSTSIAES LKKTNELLNQ EVVRLRAQAE SLRHRCEVQE FEVQKSVKKV QEAMSLAAEE SAKSEAAKEV IKSLTAQVKD IAALLPPGAY
0901: EAETTRTANL LNGFEQNGFH FTNANGQRQS RSDSMSDTSL ASPLAMPARS MNGLWRNSQS PRNTDASMGE LLSEGVRISN GFSEDGRNSR SSAASASNAS
1001: QVEAEWIEQY EPGVYITLLA LGDGTRDLKR VRFSRRRFRE QQAETWWSEN RERVYEKYNI RGTDRSSVAT SPISQSQF
0101: TLDLICKDKV EAEVWIAGLK ALISGQAGRS KIDGWSDGGL SIADSRDLTL SSPTNSSVCA SRDFNIADSP YNSTNFPRTS RTENSVSSER SHVASDSPNM
0201: LVRGTGSDAF RVSVSSVQSS SSHGSAPDDC DALGDVYIWG EVLCENVTKF GADKNIGYLG SRSDVLIPKP LESNVVLDVH HIACGVKHAA LVSRQGEVFT
0301: WGEASGGRLG HGMGKDVTGP QLIESLAATS IDFVACGEFH TCAVTMTGEI YTWGDGTHNA GLLGHGTDVS HWIPKRISGP LEGLQIASVS CGPWHTALIT
0401: STGQLFTFGD GTFGVLGHGD KETVFYPREV ESLSGLRTIA VACGVWHAAA IVEVIVTHSS SSVSSGKLFT WGDGDKSRLG HGDKEPRLKP TCVSALIDHT
0501: FHRVACGHSL TVGLTTSGKV YTMGSTVYGQ LGNPNADGKL PCLVEDKLTK DCVEEIACGA YHVAVLTSRN EVFTWGKGAN GRLGHGDVED RKAPTLVDAL
0601: KERHVKNIAC GSNFTAAICL HKWVSGTEQS QCSACRQAFG FTRKRHNCYN CGLVHCHSCS SKKSLKAALA PNPGKPYRVC DSCHSKLSKV SEANIDSRKN
0701: VMPRLSGENK DRLDKTEIRL AKSGIPSNID LIKQLDNRAA RQGKKADTFS LVRTSQTPLT QLKDALTNVA DLRRGPPKPA VTPSSSRPVS PFSRRSSPPR
0801: SVTPIPLNVG LGFSTSIAES LKKTNELLNQ EVVRLRAQAE SLRHRCEVQE FEVQKSVKKV QEAMSLAAEE SAKSEAAKEV IKSLTAQVKD IAALLPPGAY
0901: EAETTRTANL LNGFEQNGFH FTNANGQRQS RSDSMSDTSL ASPLAMPARS MNGLWRNSQS PRNTDASMGE LLSEGVRISN GFSEDGRNSR SSAASASNAS
1001: QVEAEWIEQY EPGVYITLLA LGDGTRDLKR VRFSRRRFRE QQAETWWSEN RERVYEKYNI RGTDRSSVAT SPISQSQF
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain [Source:TAIR;Acc:AT5G42140]
SUBAcon: [cytosol,endoplasmic reticulum,plastid]
SUBAcon: [cytosol,endoplasmic reticulum,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.