Factsheet for TraesCS6A01G153100.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G326100.1
TraesCS6B01G356400.1
TraesCS6D01G305800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63860.1	TraesCS6A01G326100.1	AT2G32950.1	19165148
AT5G63860.1	TraesCS6B01G356400.1	AT2G32950.1	19165148
AT5G63860.1	TraesCS6D01G305800.1	AT2G32950.1	19165148

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G142500.1	Wheat	golgi	92.13	98.41
TraesCS6B01G180900.1	Wheat	cytosol	82.77	96.05
HORVU6Hr1G030600.2	Barley	plasma membrane	86.17	91.63
Os02t0554100-01	Rice	cytosol, plasma membrane	75.74	78.59
TraesCS2A01G306400.3	Wheat	cytosol	70.85	75.17
GSMUA_Achr6P17690_001	Banana	cytosol	66.81	71.53
GSMUA_Achr3P19000_001	Banana	nucleus	68.09	71.27
VIT_07s0031g02560.t01	Wine grape	cytosol	65.74	69.44
CDX81201	Canola	cytosol	64.04	68.41
Bra037755.1-P	Field mustard	cytosol	60.43	68.27
AT5G63860.1	Thale cress	cytosol	63.4	67.73
Bra029198.1-P	Field mustard	cytosol	59.36	67.72
CDY31347	Canola	cytosol	62.77	67.66
CDY60046	Canola	cytosol	64.26	67.41
CDY43762	Canola	cytosol	60.85	66.82
Bra024242.1-P	Field mustard	cytosol	58.3	66.67
Solyc05g018620.2.1	Tomato	cytosol	42.77	65.47
CDY39843	Canola	cytosol	56.17	65.35
CDX84451	Canola	cytosol	61.49	64.8
KRH59606	Soybean	cytosol	58.3	62.7
KRH63996	Soybean	nucleus	63.4	61.83
KRH53944	Soybean	plastid	62.13	61.6
KRH40960	Soybean	cytosol	41.28	57.4
TraesCS7A01G284800.1	Wheat	cytosol	22.77	26.82
TraesCS1A01G076400.1	Wheat	mitochondrion	22.13	24.82
TraesCS5A01G364400.2	Wheat	mitochondrion	22.34	23.97
TraesCS2A01G236300.4	Wheat	cytosol	23.19	22.2
TraesCS3A01G319000.1	Wheat	cytosol	19.15	21.95
TraesCS5A01G173400.1	Wheat	cytosol	22.13	21.71
TraesCS3A01G512900.1	Wheat	cytosol	28.3	14.6
TraesCS1A01G020400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	28.09	14.55
TraesCS1A01G240600.2	Wheat	cytosol	33.62	14.4
TraesCS7A01G185400.1	Wheat	cytosol	30.43	14.13
TraesCS6A01G261000.1	Wheat	cytosol	25.53	13.14
TraesCS1A01G366800.1	Wheat	cytosol	28.51	12.84
TraesCS2A01G581400.1	Wheat	cytosol	28.94	12.71
TraesCS2A01G456700.1	Wheat	cytosol, nucleus, peroxisome	27.23	12.17

Protein Annotations

Gene3D:2.130.10.30	MapMan:26.1.3.1	GO:GO:0003674	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515
GO:GO:0008150	GO:GO:0009628	GO:GO:0009881	GO:GO:0010224	GO:GO:0038023	GO:GO:0042803
InterPro:IPR000408	InterPro:IPR009091	PFAM:PF00415	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012
PANTHER:PTHR22870	PANTHER:PTHR22870:SF317	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SUPFAM:SSF50985	EnsemblPlantsGene:TraesCS6A01G153100
EnsemblPlants:TraesCS6A01G153100.1	InterPro:UVR8	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6A:-:139127978..139148515

Molecular Weight (calculated)

50661.5 Da

IEP (calculated)

6.098

GRAVY (calculated)

-0.339

Length

470 amino acids

Sequence
(BLAST)

001: MHCFHSVVPL HLVESRDSRA SSRDPWILSL MDAKAEASGD DAVPEAPEQS VVLISAGANH SVALLSGQMV CSWGRGEDGQ LGHGDSEDRP VPTVLTSFDV
101: PRITSVVCGA DHTAAYSDDE MQLYSWGWGD FGRLGHGNSS DVFNPQPVVA LQGMKIKQIA CGDSHCLAVT VTGQVHSWGR NQNGQLGLGN NEDSLLPQKI
201: KAFQGVCVKM IAAGAEHTTA ITEDGHLYGW GWGRYGNLGL SDRDDRLVPE KVSSVEGEKM VLVACGWRHS VSVSSSGGLY TYGWSKYGQL GHGDFEDHLV
301: PRKIEALKDV SISQIAGGWR HTMAVASDGK LYGWGWNKFG QVGVGDDVDH CSPVEVNFPD EQKIAQVACG WRHTLALTEN KNVFSWGRGA SGQLGHGEII
401: DRNTPKMIDA LSLDGTACKQ LESSNAVPMT AKVWVPPSKR FAIVPEENVS KPGNGTDKHA PEGDAKRMRV

Best Arabidopsis Sequence Match ( AT3G02510.1 )
(BLAST)

001: MVTATSIIAW GSGEDGQLGI GTNEEKEWAC VVEALEPYSV RSVVSGSRNS LAICDDGTMF TWGWNQRGTL GHQPETKTEN IPSRVKALAN VKITQAAIGG
101: WHCLAVDDQG RAYAWGGNEY GQCGEEPLKD EMGRPVRRDI VIPKRCAPKL TVRQVAAGGT HSVVLTREGH VWTWGQPWPP GDIKQISVPV RVQGLENVRL
201: IAVGAFHNLA LEEDGRLLAW GNNEYGQLGT GDTQPTSHPV PVQGLDDLTL VDIAAGGWHS TALTDKGEVY GWGRGEHGRL GLGDNDKSSK MVPQKVNLLA
301: EEDIIQVSCG GTHSVALTRD GRIFSFGRGD HGRLGYGRKV TTGQPLELPI KIPPPEGSFN HTDEEEEGKW SAKSIACGGR HTLAIVEWKS DDI

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:Q0WSJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.