Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G63860.1 | CDY12145 | AT2G32950.1 | 19165148 |
| AT5G63860.1 | CDY52540 | AT2G32950.1 | 19165148 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31347 | Canola | cytosol | 93.07 | 86.24 |
| CDX81201 | Canola | cytosol | 88.86 | 81.59 |
| AT5G63860.1 | Thale cress | cytosol | 88.37 | 81.14 |
| CDY60046 | Canola | cytosol | 88.86 | 80.13 |
| CDY43762 | Canola | cytosol | 84.16 | 79.44 |
| CDX84451 | Canola | cytosol | 84.9 | 76.91 |
| VIT_07s0031g02560.t01 | Wine grape | cytosol | 77.48 | 70.34 |
| Solyc05g018620.2.1 | Tomato | cytosol | 51.49 | 67.75 |
| GSMUA_Achr6P17690_001 | Banana | cytosol | 71.78 | 66.06 |
| EES10837 | Sorghum | cytosol | 71.78 | 65.46 |
| GSMUA_Achr3P19000_001 | Banana | nucleus | 72.28 | 65.03 |
| Zm00001d003632_P003 | Maize | extracellular | 71.04 | 64.79 |
| HORVU2Hr1G076180.1 | Barley | cytosol, endoplasmic reticulum | 69.55 | 63.72 |
| Os04t0435700-01 | Rice | plasma membrane | 71.29 | 63.58 |
| Os02t0554100-01 | Rice | cytosol, plasma membrane | 70.79 | 63.13 |
| TraesCS2A01G306400.3 | Wheat | cytosol | 68.81 | 62.75 |
| TraesCS2D01G304900.2 | Wheat | cytosol | 68.81 | 62.75 |
| TraesCS2B01G323100.1 | Wheat | unclear | 68.56 | 62.67 |
| KRH53944 | Soybean | plastid | 72.52 | 61.81 |
| KRH59606 | Soybean | cytosol | 66.83 | 61.78 |
| KRH63996 | Soybean | nucleus | 72.52 | 60.79 |
| TraesCS6B01G180900.1 | Wheat | cytosol | 60.15 | 60.0 |
| TraesCS6D01G142500.1 | Wheat | golgi | 65.1 | 59.77 |
| HORVU6Hr1G030600.2 | Barley | plasma membrane | 65.35 | 59.73 |
| KRH40960 | Soybean | cytosol | 47.77 | 57.1 |
| TraesCS6A01G153100.1 | Wheat | golgi | 65.35 | 56.17 |
| CDY34733 | Canola | cytosol | 20.3 | 24.48 |
| CDY16215 | Canola | cytosol | 22.52 | 23.58 |
| CDY44785 | Canola | mitochondrion | 25.0 | 23.33 |
| CDY69131 | Canola | cytosol | 18.32 | 23.05 |
| CDY46423 | Canola | cytosol | 21.29 | 22.69 |
| CDY40735 | Canola | mitochondrion | 24.5 | 22.65 |
| CDX69479 | Canola | cytosol | 21.53 | 21.91 |
| CDY26488 | Canola | cytosol | 21.29 | 21.61 |
| CDY02190 | Canola | mitochondrion | 22.77 | 20.77 |
| CDY51633 | Canola | mitochondrion | 22.77 | 20.72 |
| CDX97668 | Canola | cytosol | 22.28 | 18.87 |
| CDY56827 | Canola | cytosol | 22.28 | 18.87 |
| CDY43240 | Canola | cytosol | 22.03 | 18.86 |
| CDY57523 | Canola | cytosol | 21.78 | 18.68 |
| CDY04192 | Canola | cytosol | 21.78 | 17.89 |
| CDY39172 | Canola | cytosol | 21.53 | 17.68 |
| CDY01845 | Canola | plastid | 22.28 | 17.41 |
| CDX96062 | Canola | plastid | 22.03 | 17.18 |
| CDY28863 | Canola | cytosol | 22.03 | 17.12 |
| CDY56518 | Canola | cytosol, plastid | 21.53 | 16.73 |
| CDX83586 | Canola | cytosol, plastid | 21.29 | 16.26 |
| CDY13609 | Canola | cytosol | 21.29 | 16.26 |
| CDX99731 | Canola | cytosol, plastid | 21.04 | 15.89 |
| CDY40988 | Canola | cytosol, plastid | 21.04 | 15.48 |
| CDY66504 | Canola | cytosol | 30.45 | 14.91 |
| CDX87986 | Canola | cytosol | 6.93 | 13.59 |
| CDY47138 | Canola | cytosol | 34.9 | 13.47 |
| CDY70949 | Canola | cytosol | 11.39 | 12.99 |
| CDY11586 | Canola | cytosol | 33.66 | 12.92 |
| CDX69686 | Canola | nucleus | 34.16 | 12.9 |
| CDY48550 | Canola | cytosol | 31.19 | 12.86 |
| CDX97187 | Canola | nucleus | 33.66 | 12.85 |
| CDY31624 | Canola | cytosol | 30.94 | 12.72 |
| CDX85690 | Canola | nucleus | 33.42 | 12.62 |
| CDY14709 | Canola | nucleus | 21.53 | 12.59 |
| CDX91165 | Canola | nucleus | 33.17 | 12.49 |
| CDX87989 | Canola | cytosol | 30.94 | 12.47 |
| CDX92532 | Canola | nucleus | 33.66 | 12.21 |
| CDX85076 | Canola | cytosol | 31.19 | 12.14 |
| CDY21795 | Canola | cytosol | 28.47 | 12.02 |
| CDY12764 | Canola | cytosol | 30.94 | 11.93 |
| CDX77871 | Canola | cytosol | 27.97 | 11.91 |
| CDX88891 | Canola | cytosol, mitochondrion, nucleus | 33.17 | 11.81 |
| CDX87557 | Canola | cytosol | 31.19 | 11.74 |
| CDY13998 | Canola | nucleus | 32.43 | 11.74 |
| CDX88324 | Canola | cytosol | 30.69 | 11.69 |
| CDY44086 | Canola | plasma membrane, vacuole | 30.2 | 11.6 |
| CDY28580 | Canola | plasma membrane | 29.95 | 11.59 |
| CDX77534 | Canola | cytosol | 31.44 | 11.43 |
| CDY20113 | Canola | endoplasmic reticulum, extracellular | 23.27 | 11.39 |
| CDY21840 | Canola | endoplasmic reticulum, extracellular | 23.27 | 11.38 |
| CDX70876 | Canola | cytosol | 31.19 | 11.3 |
| CDY49416 | Canola | cytosol | 31.19 | 11.26 |
| CDX68076 | Canola | cytosol | 17.33 | 8.43 |
Protein Annotations
| Gene3D:2.130.10.30 | MapMan:26.1.3.1 | UniProt:A0A078HSV8 | EnsemblPlants:CDY39843 | ProteinID:CDY39843 | ProteinID:CDY39843.1 |
| GO:GO:0003674 | GO:GO:0004871 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0009628 | GO:GO:0009881 | GO:GO:0009987 | GO:GO:0010224 | GO:GO:0038023 |
| GO:GO:0042803 | EnsemblPlantsGene:GSBRNA2T00068666001 | InterPro:IPR000408 | InterPro:IPR009091 | PFAM:PF00415 | PRINTS:PR00633 |
| ScanProsite:PS00626 | PFscan:PS50012 | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF317 | InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens |
| SUPFAM:SSF50985 | UniParc:UPI0004EE188E | InterPro:UVR8 | SEG:seg | : | : |
Description
BnaC02g42750DBnaC02g42750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HSV8]
Coordinates
chrLK032458:+:187061..190625
Molecular Weight (calculated)
43490.5 Da
IEP (calculated)
4.938
GRAVY (calculated)
-0.437
Length
404 amino acids
Sequence
(BLAST)
(BLAST)
001: MIGEEEDDEE TILSLSLCLP GDVVCSWGRG EDGQLGHGDA EDRSSPTQLS ALDEHQIVSV TCGADHTVTY SQSRLEVYSW GWGDFGRLGH GNSSDLFTPL
101: PIKALHGVRI KQIACGDNHC LAVTMEGEVQ SWGRNQNGQL GLGNTEDSLV PQKIQAFEGV RIKMVAAGAE HTAAVTEDGD LYGWGWGRYG NFGLGDRNDR
201: LVPERVTSAS GEKMSMVACG WRHTISDHLV PHKLEALGNS VISQISGGWR HTMALTSDGK LYGWGWNKFG QVGVGNNVDQ CSPVQVRFPD DQALVQVSCG
301: WRHTLAVTER NNVFAWGRGT NGQLGIGESL DRNSPKIIEA LSIDGASGQH IESSSFDPSS GKSWVSPSER YAVVPGETGQ TDSTSKGNGG DISVPQTDAK
401: RVRL
101: PIKALHGVRI KQIACGDNHC LAVTMEGEVQ SWGRNQNGQL GLGNTEDSLV PQKIQAFEGV RIKMVAAGAE HTAAVTEDGD LYGWGWGRYG NFGLGDRNDR
201: LVPERVTSAS GEKMSMVACG WRHTISDHLV PHKLEALGNS VISQISGGWR HTMALTSDGK LYGWGWNKFG QVGVGNNVDQ CSPVQVRFPD DQALVQVSCG
301: WRHTLAVTER NNVFAWGRGT NGQLGIGESL DRNSPKIIEA LSIDGASGQH IESSSFDPSS GKSWVSPSER YAVVPGETGQ TDSTSKGNGG DISVPQTDAK
401: RVRL
001: MAEDMAADEV TAPPRKVLII SAGASHSVAL LSGDIVCSWG RGEDGQLGHG DAEDRPSPTQ LSALDGHQIV SVTCGADHTV AYSQSGMEVY SWGWGDFGRL
101: GHGNSSDLFT PLPIKALHGI RIKQIACGDS HCLAVTMEGE VQSWGRNQNG QLGLGDTEDS LVPQKIQAFE GIRIKMVAAG AEHTAAVTED GDLYGWGWGR
201: YGNLGLGDRT DRLVPERVTS TGGEKMSMVA CGWRHTISVS YSGALYTYGW SKYGQLGHGD LEDHLIPHKL EALSNSFISQ ISGGWRHTMA LTSDGKLYGW
301: GWNKFGQVGV GNNLDQCSPV QVRFPDDQKV VQVSCGWRHT LAVTERNNVF AWGRGTNGQL GIGESVDRNF PKIIEALSVD GASGQHIESS NIDPSSGKSW
401: VSPAERYAVV PDETGLTDGS SKGNGGDISV PQTDVKRVRI
101: GHGNSSDLFT PLPIKALHGI RIKQIACGDS HCLAVTMEGE VQSWGRNQNG QLGLGDTEDS LVPQKIQAFE GIRIKMVAAG AEHTAAVTED GDLYGWGWGR
201: YGNLGLGDRT DRLVPERVTS TGGEKMSMVA CGWRHTISVS YSGALYTYGW SKYGQLGHGD LEDHLIPHKL EALSNSFISQ ISGGWRHTMA LTSDGKLYGW
301: GWNKFGQVGV GNNLDQCSPV QVRFPDDQKV VQVSCGWRHT LAVTERNNVF AWGRGTNGQL GIGESVDRNF PKIIEALSVD GASGQHIESS NIDPSSGKSW
401: VSPAERYAVV PDETGLTDGS SKGNGGDISV PQTDVKRVRI
Arabidopsis Description
UVR8Ultraviolet-B receptor UVR8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN03]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.