CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21795	Canola	cytosol	98.52	97.7
AT3G47660.4	Thale cress	cytosol	80.61	77.27
VIT_17s0000g05980.t01	Wine grape	endoplasmic reticulum	32.77	45.01
CDY70949	Canola	cytosol	15.6	41.81
Solyc03g116360.1.1	Tomato	cytosol	40.89	41.01
CDY66504	Canola	cytosol	35.19	40.48
CDX69686	Canola	nucleus	45.52	40.37
CDX85690	Canola	nucleus	45.21	40.09
CDX91165	Canola	nucleus	45.1	39.89
CDX97187	Canola	nucleus	44.36	39.79
GSMUA_Achr4P00510_001	Banana	cytosol	39.73	39.23
CDX87986	Canola	cytosol	8.43	38.84
CDY28580	Canola	plasma membrane	42.57	38.7
CDY44086	Canola	plasma membrane, vacuole	42.68	38.5
CDX92532	Canola	nucleus	45.1	38.42
CDY13998	Canola	nucleus	44.99	38.26
TraesCS7A01G185400.1	Wheat	cytosol	40.57	38.04
CDX88891	Canola	cytosol, mitochondrion, nucleus	45.42	37.97
TraesCS7B01G090600.1	Wheat	cytosol	40.78	37.94
CDX70876	Canola	cytosol	44.57	37.94
TraesCS7D01G187100.3	Wheat	cytosol	40.57	37.71
CDY47138	Canola	cytosol	40.15	36.39
CDX88324	Canola	cytosol	40.57	36.29
CDX87557	Canola	cytosol	40.89	36.16
CDY11586	Canola	cytosol	39.94	35.99
HORVU7Hr1G038070.12	Barley	cytosol	35.3	35.52
CDY12764	Canola	cytosol	38.04	34.45
CDY48550	Canola	cytosol	35.3	34.18
PGSC0003DMT400001620	Potato	cytosol	14.12	33.5
CDX85076	Canola	cytosol	35.93	32.85
CDX68076	Canola	cytosol	28.56	32.65
CDY49416	Canola	cytosol	37.83	32.08
CDY43762	Canola	cytosol	13.91	30.84
CDY46423	Canola	cytosol	12.22	30.61
CDX77534	Canola	cytosol	35.51	30.33
CDX84451	Canola	cytosol	14.23	30.27
CDY31624	Canola	cytosol	30.77	29.7
CDY31347	Canola	cytosol	13.49	29.36
CDX87989	Canola	cytosol	30.87	29.24
CDX81201	Canola	cytosol	13.38	28.86
CDY60046	Canola	cytosol	13.59	28.79
CDY16215	Canola	cytosol	11.59	28.5
CDY69131	Canola	cytosol	9.59	28.35
CDY39843	Canola	cytosol	11.91	27.97
GSMUA_Achr7P20980_001	Banana	cytosol	40.36	26.36
CDY43240	Canola	cytosol	12.75	25.64
CDY44785	Canola	mitochondrion	11.7	25.64
CDY40735	Canola	mitochondrion	11.8	25.63
CDY02190	Canola	mitochondrion	11.91	25.51
CDY57523	Canola	cytosol	12.64	25.48
CDX69479	Canola	cytosol	10.64	25.44
CDY51633	Canola	mitochondrion	11.8	25.23
CDY26488	Canola	cytosol	10.54	25.13
CDY34733	Canola	cytosol	8.54	24.18
CDY39172	Canola	cytosol	12.43	23.98
CDY04192	Canola	cytosol	12.43	23.98
CDX96062	Canola	plastid	13.07	23.94
CDY01845	Canola	plastid	12.96	23.79
CDY13609	Canola	cytosol	13.07	23.44
CDY56518	Canola	cytosol, plastid	12.64	23.08
CDX83586	Canola	cytosol, plastid	12.86	23.06
CDY28863	Canola	cytosol	12.54	22.88
CDY56827	Canola	cytosol	11.49	22.85
CDX97668	Canola	cytosol	11.49	22.85
CDX99731	Canola	cytosol, plastid	12.75	22.62
CDY40988	Canola	cytosol, plastid	12.64	21.86
CDY14709	Canola	nucleus	12.22	16.79
CDY21840	Canola	endoplasmic reticulum, extracellular	11.8	13.56
CDY20113	Canola	endoplasmic reticulum, extracellular	11.7	13.45

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	GO:A0A078CKY8	EnsemblPlants:CDX77871
ProteinID:CDX77871	ProteinID:CDX77871.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
EnsemblPlantsGene:GSBRNA2T00129057001	InterPro:IPR000408	InterPro:IPR009091	InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR017455
PFAM:PF00415	PFAM:PF01363	InterPro:PH-like_dom_sf	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012
PFscan:PS50178	PANTHER:PTHR22870	PANTHER:PTHR22870:SF244	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064
SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI0004EE16FF	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel
InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

BnaC03g53480D

Coordinates

chrLK031813:+:1315493..1318942

Molecular Weight (calculated)

103176.0 Da

IEP (calculated)

8.499

GRAVY (calculated)

-0.381

Length

949 amino acids

Sequence
(BLAST)

001: MACSQRSLPT DRENEQAIAI LKKGAYLLKY GRRGKPKFYP FRLSSDEIFL LWYCGKTEKR LKLSSVTRII PGQRTSVFRR YPQPTKEYQS FSLIYGDRSL
101: DLVCKDKDEA EFWITTLRAL LSRNCSSSLV LHSRSRSFVP DYGGEQSSSN IRSVSSDTSC EEHAKKASGS HINTPQRLGK VFSEVLSQTA VLRALSLDEM
201: VHKPHNTSPE TVKNRPTNNH SPAVDTSKYT VSSALSSSSQ GSTFEDLKSL CDVFVWGESI GDGLLLGCGG GAMHKSESSS SLTAETFLPK VLKSHVALDA
301: QGISCGTNYA VLVTKQGQMY SWGEESGGRL GHGVCSYVPQ PKLIDEFDGS SVELADCGEF HTCAVTSSGD LYTWGDGAHN AGLLGLGSEA SHWKPVRILG
401: QMEGINVKTI SCGPWHTAFV TSEGKLFTYG DGTFGALGHG DRVSTSVPRE AEALSGCRTM KIACGVWHSA AVVSVFGEAA SWGKLFTWGD GEDGKLGHGD
501: KESRLIPSCV AELDATSFQQ VACGQSVTVA LSASGQVYAM GVLDPGHENV VKAPSCIEGG LGKSCVQEVA CGFHHIAVLN SKAEVYTWGR GSNGQLGHGD
601: TENRRLPTLV RALKGKQVRK VVCGSNYTAT ICLHKPITGT DSSRCSGCRH PFNYMRKLHN CYNCGSVFCN ACTSKKSLAA AMAPKTNRPY RVCDDCYIKL
701: EGVREYLGTP ANNSARFSNA SLQSSINEMD DFGTTPQRQL LRVDSFDFFR QSKIPDLKTI GETSGGSHAS SSSSFNLKGI RQLSRLASFD SVNQQGKQRT
801: KHCASKSDTS SLVRHSVTCG LPFSRRGSVE LFPLSIKSSP VESVGNTSDF TADITDTELL QEGTKKPNQC LNQEISVLKA QVEELTRKTK QLEAELGTTS
901: KKLEVAVLMQ RDDAEKIKTS EEIVRSLTLQ LMDATKKGVD KTRRRRSSF

Best Arabidopsis Sequence Match ( AT3G47660.2 )
(BLAST)

001: MACFQRSVPT DRENEQAIAI LKKGAYLLKY GRRGKPKFYP FRLSSDEIYL LWYCGKKEKR LKLSSVTRII PGQRTAVFRR YPQPTKEYQS FSLIYGERSL
101: DLVCKDKDEA EFWLTTLRAL LSRNNSSALV LHSRSRSLAP ENGEQSSSSQ NSKSNIRSVS SDTSYEEHAK KASGSHCNTP QRLGKVFSEV LSQTAVLKAL
201: SLDELVHKPH TSPPETIENR PTNHSSPGVD TSKYSISSAV SSSSQGSTFE DLKSLCDVFV WGESIGDGLL GGGMHKSGSS SSLMTDSFLP KVLKSHVALD
301: AQSISCGTNY AVLVTKQGQM YSWGEESGGR LGHGVCSYVP HPKLIDEFNG STVELADCGE FHTCAVTASG DLYAWGDGDH NAGLLGLGSG ASHWKPVRIL
401: GQMEGIYVKA ISCGPWHTAF VTSEGKLFTF GDGTFGALGH GDRISTNIPR EVEALNGCRT IKAACGVWHS AAVVSVFGEA TSSGKLFTWG DGDDGRLGHG
501: DIECRLIPSC VTELDTTSFQ QVACGQSITV ALSMSGQVYA MGTADPSHDI VRAPSCIEGG LGKSFVQEVA CGFHHIAVLN SKAEVYTWGK GSNGQLGHGD
601: TEYRCMPTLV KALKGKQVRK VVCGSNYTAT ICLHKPITGT DSTKCSGCRH PFNYMRKLHN CYNCGSVFCN SCTSKKSLAA AMAPKTNRPY RVCDDCYIKL
701: EGIRESLATP ANSARFSNAS LPSSYEMDEI GITPQRQLLR VDSFDFFRQT KHADLKTIGE TSGGSCTSSI HSNMDIKGSF NLKGIRRLSR LTSFDSVQEE
801: GKQRTKHCAS KSDTSSLIRH SVTCGLPFSR RGSVELFPLS IKSSPVESVA TTSDFTTDIT DHELLQEVPK KSNQCLSHEI SVLKAQVEEL TLKSKKLETE
901: LGKTSKKLEV AVLMARDDAE KIKSSEEIVR SLTLQLMNTT KKEVDKTRRH RNSF

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLL5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.