Factsheet for Solyc03g116360.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 3
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400001620	Potato	cytosol	40.38	95.5
VIT_17s0000g05980.t01	Wine grape	endoplasmic reticulum	38.9	53.26
Solyc05g007290.1.1	Tomato	endoplasmic reticulum	49.05	45.99
GSMUA_Achr4P00510_001	Banana	cytosol	46.62	45.89
Solyc11g065120.1.1	Tomato	cytosol	52.22	43.76
TraesCS7A01G185400.1	Wheat	cytosol	46.51	43.48
TraesCS7B01G090600.1	Wheat	cytosol	46.3	42.94
Solyc12g099740.1.1	Tomato	nucleus	46.51	42.93
TraesCS7D01G187100.3	Wheat	cytosol	46.19	42.8
HORVU7Hr1G038070.12	Barley	cytosol	41.44	41.57
CDX77871	Canola	cytosol	41.01	40.89
Bra019511.1-P	Field mustard	cytosol	40.91	40.44
CDY21795	Canola	cytosol	40.8	40.33
Solyc02g036390.1.1	Tomato	cytosol	32.98	39.75
AT3G47660.4	Thale cress	cytosol	40.06	38.28
Solyc04g071040.2.1	Tomato	cytosol	43.76	36.77
Solyc03g005590.1.1	Tomato	cytosol, plastid	40.91	36.13
Solyc05g018620.2.1	Tomato	cytosol	10.15	31.27
GSMUA_Achr7P20980_001	Banana	cytosol	46.51	30.28
Solyc02g085780.2.1	Tomato	cytosol	12.26	29.74
Solyc05g006940.2.1	Tomato	cytosol	11.95	28.68
Solyc05g056590.2.1	Tomato	cytosol	8.25	28.36
Solyc07g042970.2.1	Tomato	mitochondrion	6.87	26.97
Solyc07g042980.2.1	Tomato	cytosol	6.77	26.34
Solyc05g014030.2.1	Tomato	cytosol	13.95	24.77
Solyc02g089220.2.1	Tomato	mitochondrion	8.35	23.94
Solyc07g063300.2.1	Tomato	plasma membrane	12.05	23.46
Solyc02g081250.1.1	Tomato	cytosol	35.73	16.2
Solyc05g007280.2.1	Tomato	cytosol	0.21	3.39

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	InterPro:BRX_N	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000408	InterPro:IPR009091	InterPro:IPR011993
InterPro:IPR013083	InterPro:IPR017455	UniProt:K4BLD8	PFAM:PF00415	PFAM:PF01363	PFAM:PF13713
InterPro:PH-like_dom_sf	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50178	PANTHER:PTHR22870
PANTHER:PTHR22870:SF244	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985
SUPFAM:SSF57903	EnsemblPlantsGene:Solyc03g116360.1	EnsemblPlants:Solyc03g116360.1.1	UniParc:UPI0002768F14	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel
InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr3:+:65832194..65840327

Molecular Weight (calculated)

103068.0 Da

IEP (calculated)

8.188

GRAVY (calculated)

-0.426

Length

946 amino acids

Sequence
(BLAST)

001: MNNVQRNSLG ERNVEQAITA LKRGSYLLKY GRRGKPKFCP FRLSTDETRL IWYVEKEEKQ LQLSQVSRII PGQRTANFLR FPRPEKEYQS FSLLYGKSSL
101: DLICKDKEEA EVWFVALRAL TSRVDCQKWT SDIRYDIAYS DGSTSATQRR SHSALSSSSG SSSTPYEDPK KNLLGSVPSQ SPPRKRLERA FSDYLLYNSA
201: AKCSSHREFA TSSFNSRSYG NLDDEIGQSS TDTIRSSFSS AISSSSHGSF ANADTLCDIL IWGEGIGDGL LGGGMCGLGK FETARRDAPL PRTLESALIL
301: DAQYVACGSR HAVLITKQGE IFSWGEGLSG RLGHGVESDI SSPKLIDSLC GLNVTSAACG DYHTCATTIT GDLYTWGEGT FNFGLLGHDT GISHWIPKKV
401: RGPLVGKHVS YVSCGPWHSA VITSVGQLFT FGDGTFGALG HGDRSSIGIP REVETLQGLR TVRVACGHWH TAAVVELSFD DSSSCNSPPW KLFTWGNGDD
501: GQLGHEDNAS RHTPCKVVQL DGINFSRVAC GHSITVALTT LGQVYTMGKV DYGQLGIPGS TGKFPSRVQG KITDCFIEEI ACGSFHVVSL SSNSELYTWG
601: KGGNGQLGHG DNHDRNTPTL VEALKAKKVK DVVCGNNFTA AICLHREVSL ADNSICAGCQ SPFNLRRKRH NCYNCGLVFC TVCTSKRSVR ASLAPKMNKP
701: YRVCEDCFTK LNKGLDIGLT CLPPKVTTGS LQKNTGERRK ETSPSKQKGL LSRLSSFNSF RSDDKRFRKN QKQDSNSENV SPIPNGNTQS EVSQTSSQLL
801: SFSSCPEILS VSFVGSTSHS QAGSPASFES CSSNSVLLRS AFAAQANHEV DLDDSKQTSE SLKKEISILK EQVDILTQRS LFLEAELEKK STQLQEKSEE
901: AITETDKNNA AKEVIKSLMT QVKGNTARAP QDGSAENLIH STMTVP

Best Arabidopsis Sequence Match ( AT1G69710.1 )
(BLAST)

0001: MCILELRLFA AASMADSLRT SFSERDVEQA ITSLKKGSYL LKYGRRGKPK FCPFQLTSDE SALVWYSGKE EKQIKLSQVL RIVPGQRTPT FKRYPRPEKE
0101: YQSFSLICPD RSLDLICKDK DEAEVWVVGL KSLITRVKVS KWKTTIKPEI TSAECPTPHA RRVSPFVTIL DQVIQPSNET STQTRLGKVF SDIVAITAPP
0201: SNNNQTEASG NLFCPFSPTP ANVENSNLRF STNDPFRLSL SSAVSTSSHG SYHEDFDALG DVFVWGESIS DGVLSGTGNS LNSTTEDALL PKALESTIVL
0301: DAQNIACGKC HAVLVTKQGE IFSWGEGKGG KLGHGLETDA QKPKFISSVR GLGFKSLACG DFHTCAITQS GDLYSWGDGT HNVDLLGHGN ESSCWIPKRV
0401: TGDLQGLYVS DVACGPWHTA VVASSGQLFT FGDGTFGALG HGDRRSTSVP REVESLIGLI VTKVACGVWH TAAVVEVTNE ASEAEVDSSR GQVFTWGDGE
0501: KGQLGHGDND TKLLPECVIS LTNENICQVA CGHSLTVSRT SRGHVYTMGS TAYGQLGNPT AKGNFPERVE GDIVEASVEE IACGSYHVAV LTSKSEIYTW
0601: GKGLNGQLGH GNVENKREPA VVGFLREKQV KAITCGSNFT AVICVHKWVP GSEHSLCAGC RNPFNFRRKR HNCYNCGLVF CKVCSSRKSL RAALAPDMNK
0701: PYRVCYGCFT KLKKSRESSP STPTSRTRKL LNMRKSTDVS ERDSLTQKFL SVNARLSSAD SSLHYSERRH HRRDLKPEVN NSNVFPSMNG SLQPVGSPFS
0801: KGSTALPKIP KNMMVKIPGS GMSSRTTSPV SVKSTSPRRS YEVAAAESKQ LKDSFNQDMA GLKEQVEQLA SKAHQLEEEL EKTKRQLKVV TAMAADEAEE
0901: NRSAKEVIRS LTTQLKEMAE KQSQKDSIST NSKHTDKEKS ETVTQTSNQT HIRSMVSQDS QNENNLTSKS FANGHRKQND KPEKVVQDEP GVYLTLLSLP
1001: GGGTELKRVR FSRKQFTEEQ AEKWWGENGA KVCERHNILV S

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I287]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.