Factsheet for Solyc07g042970.2.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
extracellular 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51633	Canola	mitochondrion	56.43	30.63
KRH46563	Soybean	mitochondrion	56.43	30.63
AT5G60870.2	Thale cress	mitochondrion	56.43	30.09
CDY02190	Canola	mitochondrion	55.19	30.02
Bra013002.1-P	Field mustard	mitochondrion	54.77	29.8
TraesCS5D01G373300.1	Wheat	mitochondrion	53.11	29.22
Os09t0560450-01	Rice	mitochondrion	52.7	29.06
TraesCS5B01G366300.1	Wheat	mitochondrion	52.28	28.77
EER97183	Sorghum	mitochondrion	51.45	28.7
TraesCS5A01G364400.2	Wheat	mitochondrion	51.87	28.54
Os04t0226400-01	Rice	plastid	25.31	28.11
Zm00001d021372_P001	Maize	mitochondrion	50.21	28.01
HORVU5Hr1G089510.1	Barley	cytosol	38.59	25.83
GSMUA_Achr8P06920_001	Banana	cytosol	31.54	23.24
VIT_03s0017g02290.t01	Wine grape	endoplasmic reticulum, golgi	21.16	15.5
Solyc05g006940.2.1	Tomato	cytosol	20.75	12.69
Solyc02g085780.2.1	Tomato	cytosol	19.09	11.79
Solyc07g063300.2.1	Tomato	plasma membrane	18.67	9.26
Solyc05g014030.2.1	Tomato	cytosol	19.92	9.01
Solyc02g036390.1.1	Tomato	cytosol	24.48	7.52
Solyc05g018620.2.1	Tomato	cytosol	9.13	7.17
Solyc03g116360.1.1	Tomato	cytosol	26.97	6.87
Solyc05g007290.1.1	Tomato	endoplasmic reticulum	28.63	6.84
Solyc12g099740.1.1	Tomato	nucleus	25.73	6.05
Solyc11g065120.1.1	Tomato	cytosol	28.22	6.02
Solyc03g005590.1.1	Tomato	cytosol, plastid	26.14	5.88
Solyc04g071040.2.1	Tomato	cytosol	26.14	5.6
Solyc02g089220.2.1	Tomato	mitochondrion	5.39	3.94
Solyc07g042980.2.1	Tomato	cytosol	3.73	3.7
Solyc05g056590.2.1	Tomato	cytosol	4.15	3.64
Solyc02g081250.1.1	Tomato	cytosol	25.31	2.92
Solyc05g007280.2.1	Tomato	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc07g042970.2.1	EnsemblPlantsGene:Solyc07g042970.2	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF321	PFAM:PF00415	PFscan:PS50012	PRINTS:PR00633
SEG:seg	SUPFAM:SSF50985	UniParc:UPI000276C1EC	UniProt:K4CEF7	MapMan:16.12.2.2.2	:

Description

No Description!

Coordinates

chr7:+:56500282..56502857

Molecular Weight (calculated)

26207.2 Da

IEP (calculated)

10.128

GRAVY (calculated)

-0.031

Length

241 amino acids

Sequence
(BLAST)

001: MAFYYRTRRA LPIFRWRRHL SSSSSSKVAL LWESKSTDSQ KAVTVQLYSW GRGASGQLGG GIEEIRIYPS PVASFSLSPT FRLSSPIPGR LPSAPVLLSS
101: SFNEGKVDVE IGISCGLFHS ALLVDGNLWI WGKGDGGRLG FGHENPVFVP TLNTHLDSVR SVALGGLHSV ALNSLGQVFT WGYGGFGALG HKVYHRELVP
201: RLVEGSWDAE ICHVATSGTH TAAITKSGRI FKHYHVSHFT S

Best Arabidopsis Sequence Match ( AT5G60870.4 )
(BLAST)

001: MAALSHRLRS FTRRFSSTRT TQRSGGGANT KVPILYTSPD IDSDPVTLQL FSWGRGASGQ LGGGIEEIRM YPSPVANLLF RSDQSFSLAQ TPGRIDADSS
101: SFRIGISCGL FHSGLTIDGD LWIWGKGDGG RLGFGQENSV FVPNLNPLFE EHSIRCIALG GLHSVALTHQ GDVFTWGYGG FGALGHKVYT RELVPRRVDD
201: SWDCKISAIA TSGTHTAAIT ESGELYMWGR EEGDGRLGLG PGRGPNEGGG LSVPSKVKAL TVPVASVSCG GFFTMALTKE GQLWNWGANS NYELGRGDNL
301: GGWEPMPVPS LEGVRITQIA CGGYHSLALT EEGKVLSWGH GGHGQLGSSS LRNQKVPTEI EALADKKIVF IASGGSSSAA ITGIFSYRYV HLT

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:TAIR;Acc:AT5G60870]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.