Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G373300.1 | Wheat | mitochondrion | 98.61 | 81.05 |
| TraesCS5B01G366300.1 | Wheat | mitochondrion | 98.61 | 81.05 |
| TraesCS5A01G364400.2 | Wheat | mitochondrion | 97.78 | 80.37 |
| Os09t0560450-01 | Rice | mitochondrion | 91.67 | 75.51 |
| GSMUA_Achr8P06920_001 | Banana | cytosol | 67.5 | 74.31 |
| EER97183 | Sorghum | mitochondrion | 88.89 | 74.07 |
| Zm00001d021372_P001 | Maize | mitochondrion | 87.22 | 72.69 |
| Solyc07g042980.2.1 | Tomato | cytosol | 42.78 | 63.37 |
| VIT_03s0017g02290.t01 | Wine grape | endoplasmic reticulum, golgi | 53.61 | 58.66 |
| Os04t0226400-01 | Rice | plastid | 33.89 | 56.22 |
| KRH46563 | Soybean | mitochondrion | 66.39 | 53.83 |
| Bra013002.1-P | Field mustard | mitochondrion | 65.83 | 53.5 |
| CDY02190 | Canola | mitochondrion | 65.83 | 53.5 |
| CDY51633 | Canola | mitochondrion | 65.56 | 53.15 |
| AT5G60870.2 | Thale cress | mitochondrion | 64.44 | 51.33 |
| Solyc07g042970.2.1 | Tomato | mitochondrion | 25.83 | 38.59 |
| HORVU2Hr1G076180.1 | Barley | cytosol, endoplasmic reticulum | 27.5 | 22.45 |
| HORVU6Hr1G030600.2 | Barley | plasma membrane | 26.67 | 21.72 |
| HORVU7Hr1G062090.6 | Barley | cytosol | 22.78 | 19.81 |
| HORVU3Hr1G108180.1 | Barley | mitochondrion | 9.17 | 19.76 |
| HORVU1Hr1G016430.4 | Barley | cytosol | 19.72 | 17.88 |
| HORVU0Hr1G028990.2 | Barley | cytosol | 18.33 | 16.75 |
| HORVU3Hr1G076310.2 | Barley | cytosol, mitochondrion, nucleus | 20.28 | 16.08 |
| HORVU5Hr1G053180.5 | Barley | cytosol | 21.11 | 15.83 |
| HORVU5Hr1G034530.6 | Barley | cytosol | 19.44 | 13.11 |
| HORVU1Hr1G002740.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 30.56 | 12.13 |
| HORVU3Hr1G112690.2 | Barley | cytosol, plastid | 29.17 | 11.56 |
| HORVU7Hr1G038070.12 | Barley | cytosol | 28.61 | 10.92 |
| HORVU2Hr1G083590.1 | Barley | cytosol | 13.61 | 10.89 |
| HORVU2Hr1G124270.22 | Barley | cytosol, mitochondrion, nucleus | 31.67 | 10.59 |
| HORVU3Hr1G107820.4 | Barley | endoplasmic reticulum | 30.56 | 10.01 |
| HORVU1Hr1G078890.1 | Barley | cytosol | 28.89 | 9.9 |
| HORVU1Hr1G056870.2 | Barley | cytosol, endoplasmic reticulum, nucleus | 30.56 | 9.78 |
| HORVU2Hr1G104550.10 | Barley | cytosol, nucleus, plastid | 31.11 | 9.7 |
| HORVU6Hr1G066460.5 | Barley | cytosol | 26.94 | 9.09 |
Protein Annotations
| EnsemblPlants:HORVU5Hr1G089510.1 | EnsemblPlantsGene:HORVU5Hr1G089510 | Gene3D:2.130.10.30 | InterPro:IPR000408 | InterPro:IPR009091 | InterPro:RCC1/BLIP-II |
| InterPro:Reg_chr_condens | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF320 | PFAM:PF00415 | PFscan:PS50012 | PRINTS:PR00633 |
| ScanProsite:PS00626 | SEG:seg | SUPFAM:SSF50985 | UniParc:UPI000B4648CE | UniProt:A0A287S7I1 | MapMan:16.12.2.2.2 |
Description
No Description!
Coordinates
chrchr5H:-:584995927..584999426
Molecular Weight (calculated)
37196.1 Da
IEP (calculated)
6.312
GRAVY (calculated)
0.020
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: GRLPPASGTE AAGGVEVGIS CGLFHSALLV DGAAWVWGKG DGGRLGLGDE ASAFVPRANP NLAGLRVLAL GGIHSAALTA SGDVFTWGYG GFGALGHYVY
101: HRELLPRKVN GPWEGKIVHI ATSGAHTAAI TESGELYTWG RDEGDGRLGL GSGGGPGEAG SLSVPSKVSA LPVPVAAVAC GGFFTLALTL DGQLWSWGAN
201: SNFELGRGSN SSDWRPQIVP SLKNVHVIQV ACGGYHSLAL TDEGEVLSWG HGGHGQLGHP TIQNHRVPLA IKALSEERIV YIACGGSTSA AISEKGDLYM
301: WGNARDCQLG VPDLPEVQPL PVKVNFLADG DEDPSPPRVI SVAIGASHAM CLVSRQQIQK
101: HRELLPRKVN GPWEGKIVHI ATSGAHTAAI TESGELYTWG RDEGDGRLGL GSGGGPGEAG SLSVPSKVSA LPVPVAAVAC GGFFTLALTL DGQLWSWGAN
201: SNFELGRGSN SSDWRPQIVP SLKNVHVIQV ACGGYHSLAL TDEGEVLSWG HGGHGQLGHP TIQNHRVPLA IKALSEERIV YIACGGSTSA AISEKGDLYM
301: WGNARDCQLG VPDLPEVQPL PVKVNFLADG DEDPSPPRVI SVAIGASHAM CLVSRQQIQK
001: MAALSHRLRS FTRRFSSTRT TQRSGGGANT KVPILYTSPD IDSDPVTLQL FSWGRGASGQ LGGGIEEIRM YPSPVANLLF RSDQSFSLAQ TPGRIDADSS
101: SFRIGISCGL FHSGLTIDGD LWIWGKGDGG RLGFGQENSV FVPNLNPLFE EHSIRCIALG GLHSVALTHQ GDVFTWGYGG FGALGHKVYT RELVPRRVDD
201: SWDCKISAIA TSGTHTAAIT ESGELYMWGR EEGDGRLGLG PGRGPNEGGG LSVPSKVKAL TVPVASVSCG GFFTMALTKE GQLWNWGANS NYELGRGDNL
301: GGWEPMPVPS LEGVRITQIA CGGYHSLALT EEGKVLSWGH GGHGQLGSSS LRNQKVPTEI EALADKKIVF IASGGSSSAA ITDGGELWMW GNAKDFQLGV
401: PGLPEIQTTP VEVNFLTEED ECQPHKVISI SIGASHALCL VSRSP
101: SFRIGISCGL FHSGLTIDGD LWIWGKGDGG RLGFGQENSV FVPNLNPLFE EHSIRCIALG GLHSVALTHQ GDVFTWGYGG FGALGHKVYT RELVPRRVDD
201: SWDCKISAIA TSGTHTAAIT ESGELYMWGR EEGDGRLGLG PGRGPNEGGG LSVPSKVKAL TVPVASVSCG GFFTMALTKE GQLWNWGANS NYELGRGDNL
301: GGWEPMPVPS LEGVRITQIA CGGYHSLALT EEGKVLSWGH GGHGQLGSSS LRNQKVPTEI EALADKKIVF IASGGSSSAA ITDGGELWMW GNAKDFQLGV
401: PGLPEIQTTP VEVNFLTEED ECQPHKVISI SIGASHALCL VSRSP
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family protein [Source:TAIR;Acc:AT5G60870]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.