Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane
Predictor Summary:
Predictor Summary:
- cytosol 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
plasma membrane:
29385242
|
msms PMID:
29385242
doi
Biosystems Engineering, Fraunhofer Institute for Factory Operation and Automation, Joseph-von-Fraunhofer-Straße 1, 39106, Magdeburg, Germany., Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences, Free University of Berlin, Albrecht-Thaer-Weg 6, 14195, Berlin, Germany., Leibniz Institute of Plant Genetics and Crop Plant Research, Corrensstraße 3, 06466, Stadt Seeland, Gatersleben, Germany., Leibniz Institute of Vegetable and Ornamental Crops, Theodor-Echtermeyer-Weg 1, 14979, Großbeeren, Germany., Technical University of Denmark, Søltofts Plads, Building 224, 2800, Kongens Lyngby, Denmark.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G142500.1 | Wheat | golgi | 91.86 | 92.27 |
| TraesCS6B01G180900.1 | Wheat | cytosol | 83.48 | 91.11 |
| TraesCS6A01G153100.1 | Wheat | golgi | 91.63 | 86.17 |
| Os02t0554100-01 | Rice | cytosol, plasma membrane | 80.32 | 78.37 |
| HORVU2Hr1G076180.1 | Barley | cytosol, endoplasmic reticulum | 74.43 | 74.6 |
| GSMUA_Achr6P17690_001 | Banana | cytosol | 70.59 | 71.07 |
| GSMUA_Achr3P19000_001 | Banana | nucleus | 70.81 | 69.71 |
| VIT_07s0031g02560.t01 | Wine grape | cytosol | 70.14 | 69.66 |
| CDX81201 | Canola | cytosol | 68.55 | 68.86 |
| Bra037755.1-P | Field mustard | cytosol | 64.71 | 68.75 |
| AT5G63860.1 | Thale cress | cytosol | 68.1 | 68.41 |
| Bra029198.1-P | Field mustard | cytosol | 63.57 | 68.2 |
| CDY31347 | Canola | cytosol | 67.19 | 68.12 |
| CDY60046 | Canola | cytosol | 68.78 | 67.86 |
| CDY43762 | Canola | cytosol | 64.71 | 66.82 |
| Bra024242.1-P | Field mustard | cytosol | 61.99 | 66.67 |
| Solyc05g018620.2.1 | Tomato | cytosol | 45.93 | 66.12 |
| CDY39843 | Canola | cytosol | 59.73 | 65.35 |
| CDX84451 | Canola | cytosol | 65.38 | 64.8 |
| KRH59606 | Soybean | cytosol | 60.63 | 61.33 |
| KRH63996 | Soybean | nucleus | 66.52 | 61.0 |
| KRH53944 | Soybean | plastid | 65.38 | 60.97 |
| KRH40960 | Soybean | cytosol | 42.53 | 55.62 |
| HORVU5Hr1G089510.1 | Barley | cytosol | 21.72 | 26.67 |
| HORVU7Hr1G062090.6 | Barley | cytosol | 23.53 | 25.12 |
| HORVU1Hr1G016430.4 | Barley | cytosol | 21.95 | 24.43 |
| HORVU3Hr1G108180.1 | Barley | mitochondrion | 8.37 | 22.16 |
| HORVU5Hr1G053180.5 | Barley | cytosol | 23.3 | 21.46 |
| HORVU0Hr1G028990.2 | Barley | cytosol | 19.0 | 21.32 |
| HORVU3Hr1G076310.2 | Barley | cytosol, mitochondrion, nucleus | 20.14 | 19.6 |
| HORVU5Hr1G034530.6 | Barley | cytosol | 23.3 | 19.29 |
| HORVU2Hr1G083590.1 | Barley | cytosol | 16.29 | 16.0 |
| HORVU3Hr1G112690.2 | Barley | cytosol, plastid | 29.41 | 14.32 |
| HORVU3Hr1G107820.4 | Barley | endoplasmic reticulum | 35.29 | 14.19 |
| HORVU1Hr1G056870.2 | Barley | cytosol, endoplasmic reticulum, nucleus | 35.97 | 14.13 |
| HORVU7Hr1G038070.12 | Barley | cytosol | 30.09 | 14.1 |
| HORVU1Hr1G002740.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 28.73 | 14.0 |
| HORVU1Hr1G078890.1 | Barley | cytosol | 30.09 | 12.65 |
| HORVU2Hr1G124270.22 | Barley | cytosol, mitochondrion, nucleus | 30.54 | 12.55 |
| HORVU6Hr1G066460.5 | Barley | cytosol | 27.83 | 11.53 |
| HORVU2Hr1G104550.10 | Barley | cytosol, nucleus, plastid | 27.6 | 10.56 |
Protein Annotations
| Gene3D:2.130.10.30 | MapMan:26.1.3.1 | EMBL:AK357081 | EMBL:AK360385 | UniProt:F2CZM5 | GO:GO:0003674 |
| GO:GO:0004871 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 |
| GO:GO:0009628 | GO:GO:0009881 | GO:GO:0009987 | GO:GO:0010224 | GO:GO:0038023 | GO:GO:0042803 |
| EnsemblPlantsGene:HORVU6Hr1G030600 | EnsemblPlants:HORVU6Hr1G030600.2 | InterPro:IPR000408 | InterPro:IPR009091 | PFAM:PF00415 | PRINTS:PR00633 |
| ScanProsite:PS00626 | PFscan:PS50012 | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF317 | InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens |
| SUPFAM:SSF50985 | UniParc:UPI0002005611 | InterPro:UVR8 | SEG:seg | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2CZM5]
Coordinates
chrchr6H:+:128976828..128985200
Molecular Weight (calculated)
47646.8 Da
IEP (calculated)
5.395
GRAVY (calculated)
-0.363
Length
442 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAQAKAEAA GDEAVPEAPE QSVILISAGA NHSAALLSGQ MVCSWGRGED GQLGHGDSED RPVPTVLTSF DVPRVTSVIC GADHTIAYSD DEMQLYSWGW
101: GDFGRLGHGN SSDVFNPQPI VALQGMKIKQ IACGDSHCLT VTFNGQVHSW GRNQNGQLGL GNNQDSLLPQ KIKAFEGVCV KMIAAGAEHT TAITEGGDLY
201: GWGWGRYGNL GLSDRDDRSV PEKVSSVEGE KMVLVACGWR HSVSVSSSGA LYTYGWSKYG QLGHGDFQDH LVPRKLEALK DVPISQISGG WRHTMAVAED
301: GKLYGWGWNK FGQVGVEDNV DHCSPVEVNF PDEQKIVQVA CGWRHTLALT ENKNIFSWGR GASGQLGHGE IIDRNTPKMI DALSLDGSAC KQLESSNVVP
401: MTVKVWVSPS ERFALVPDEN VCKSGNGTDK HAPEGDAKRM RV
101: GDFGRLGHGN SSDVFNPQPI VALQGMKIKQ IACGDSHCLT VTFNGQVHSW GRNQNGQLGL GNNQDSLLPQ KIKAFEGVCV KMIAAGAEHT TAITEGGDLY
201: GWGWGRYGNL GLSDRDDRSV PEKVSSVEGE KMVLVACGWR HSVSVSSSGA LYTYGWSKYG QLGHGDFQDH LVPRKLEALK DVPISQISGG WRHTMAVAED
301: GKLYGWGWNK FGQVGVEDNV DHCSPVEVNF PDEQKIVQVA CGWRHTLALT ENKNIFSWGR GASGQLGHGE IIDRNTPKMI DALSLDGSAC KQLESSNVVP
401: MTVKVWVSPS ERFALVPDEN VCKSGNGTDK HAPEGDAKRM RV
001: MAEDMAADEV TAPPRKVLII SAGASHSVAL LSGDIVCSWG RGEDGQLGHG DAEDRPSPTQ LSALDGHQIV SVTCGADHTV AYSQSGMEVY SWGWGDFGRL
101: GHGNSSDLFT PLPIKALHGI RIKQIACGDS HCLAVTMEGE VQSWGRNQNG QLGLGDTEDS LVPQKIQAFE GIRIKMVAAG AEHTAAVTED GDLYGWGWGR
201: YGNLGLGDRT DRLVPERVTS TGGEKMSMVA CGWRHTISVS YSGALYTYGW SKYGQLGHGD LEDHLIPHKL EALSNSFISQ ISGGWRHTMA LTSDGKLYGW
301: GWNKFGQVGV GNNLDQCSPV QVRFPDDQKV VQVSCGWRHT LAVTERNNVF AWGRGTNGQL GIGESVDRNF PKIIEALSVD GASGQHIESS NIDPSSGKSW
401: VSPAERYAVV PDETGLTDGS SKGNGGDISV PQTDVKRVRI
101: GHGNSSDLFT PLPIKALHGI RIKQIACGDS HCLAVTMEGE VQSWGRNQNG QLGLGDTEDS LVPQKIQAFE GIRIKMVAAG AEHTAAVTED GDLYGWGWGR
201: YGNLGLGDRT DRLVPERVTS TGGEKMSMVA CGWRHTISVS YSGALYTYGW SKYGQLGHGD LEDHLIPHKL EALSNSFISQ ISGGWRHTMA LTSDGKLYGW
301: GWNKFGQVGV GNNLDQCSPV QVRFPDDQKV VQVSCGWRHT LAVTERNNVF AWGRGTNGQL GIGESVDRNF PKIIEALSVD GASGQHIESS NIDPSSGKSW
401: VSPAERYAVV PDETGLTDGS SKGNGGDISV PQTDVKRVRI
Arabidopsis Description
UVR8Ultraviolet-B receptor UVR8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN03]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.