Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G347100.2 | Wheat | cytosol | 81.94 | 91.4 |
| TraesCS3D01G312300.1 | Wheat | cytosol | 81.06 | 90.42 |
| TraesCS3A01G319000.1 | Wheat | cytosol | 81.06 | 89.76 |
| Os01t0777800-01 | Rice | cytosol | 68.94 | 78.05 |
| OQU87663 | Sorghum | cytosol | 65.42 | 73.51 |
| Zm00001d043280_P001 | Maize | cytosol | 65.2 | 72.55 |
| GSMUA_Achr6P29750_001 | Banana | cytosol | 48.24 | 55.16 |
| CDY46423 | Canola | cytosol | 41.63 | 49.87 |
| VIT_01s0026g01520.t01 | Wine grape | cytosol | 42.95 | 49.24 |
| Solyc05g006940.2.1 | Tomato | cytosol | 42.73 | 49.24 |
| CDY16215 | Canola | cytosol | 41.85 | 49.22 |
| Bra016304.1-P | Field mustard | cytosol | 39.87 | 49.05 |
| PGSC0003DMT400045467 | Potato | cytosol | 42.51 | 48.61 |
| CDY69131 | Canola | cytosol | 34.14 | 48.29 |
| Bra024664.1-P | Field mustard | cytosol | 38.11 | 48.19 |
| AT1G27060.1 | Thale cress | cytosol | 40.75 | 47.93 |
| KRH74759 | Soybean | nucleus | 42.51 | 34.28 |
| KRH69375 | Soybean | nucleus | 42.73 | 32.83 |
| CDY14709 | Canola | nucleus | 43.17 | 28.36 |
| HORVU1Hr1G016430.4 | Barley | cytosol | 23.35 | 26.7 |
| HORVU3Hr1G108180.1 | Barley | mitochondrion | 9.03 | 24.55 |
| HORVU7Hr1G062090.6 | Barley | cytosol | 21.37 | 23.43 |
| HORVU5Hr1G089510.1 | Barley | cytosol | 16.08 | 20.28 |
| HORVU6Hr1G030600.2 | Barley | plasma membrane | 19.6 | 20.14 |
| HORVU2Hr1G076180.1 | Barley | cytosol, endoplasmic reticulum | 18.94 | 19.5 |
| HORVU5Hr1G053180.5 | Barley | cytosol | 19.16 | 18.12 |
| HORVU0Hr1G028990.2 | Barley | cytosol | 13.44 | 15.48 |
| HORVU5Hr1G034530.6 | Barley | cytosol | 16.74 | 14.23 |
| HORVU2Hr1G083590.1 | Barley | cytosol | 13.88 | 14.0 |
| HORVU3Hr1G112690.2 | Barley | cytosol, plastid | 22.69 | 11.34 |
| HORVU1Hr1G002740.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 22.25 | 11.14 |
| HORVU7Hr1G038070.12 | Barley | cytosol | 22.03 | 10.6 |
| HORVU1Hr1G078890.1 | Barley | cytosol | 24.45 | 10.56 |
| HORVU1Hr1G056870.2 | Barley | cytosol, endoplasmic reticulum, nucleus | 24.89 | 10.04 |
| HORVU2Hr1G124270.22 | Barley | cytosol, mitochondrion, nucleus | 23.79 | 10.04 |
| HORVU3Hr1G107820.4 | Barley | endoplasmic reticulum | 23.79 | 9.83 |
| HORVU2Hr1G104550.10 | Barley | cytosol, nucleus, plastid | 22.69 | 8.92 |
| HORVU6Hr1G066460.5 | Barley | cytosol | 20.7 | 8.81 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G076310.2 | EnsemblPlantsGene:HORVU3Hr1G076310 | Gene3D:2.130.10.30 | InterPro:IPR000408 | InterPro:IPR009091 | InterPro:RCC1/BLIP-II |
| InterPro:Reg_chr_condens | PFAM:PF00415 | PFscan:PS50012 | PRINTS:PR00633 | ScanProsite:PS00626 | SEG:seg |
| SUPFAM:SSF50985 | UniParc:UPI000B470010 | UniProt:A0A287LR63 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chrchr3H:+:568143158..568147329
Molecular Weight (calculated)
48659.0 Da
IEP (calculated)
6.503
GRAVY (calculated)
-0.268
Length
454 amino acids
Sequence
(BLAST)
(BLAST)
001: PLYYQKKRKK CLPLLWDIVT IRFLIGRCRL SNSSDTDTTG QIEPTQMTSL PEGAMAAAAV AAAAEEEPEE AWAWTWGAGT DGQLGNGGFQ DHHLPQPLLL
101: PPRCRGRVSF IAGGGAHAIA LTSDGEVFTW GRGTHGQLGH GNLENIAHPK FVKFFENYTV TCVSTGWNHS GFATDSGQLF MCGDGSFGQL GTGDNQSRNL
201: PFEVSSFTTK HVEKLAFGMR HSLVLLKDNS VYGFGSGRRG QVGKSASKNQ KIYSIPRLID GFPNCKIVNL YANGDHSAAL DESGQLYIWG RALVGEHDDD
301: QPRAAFPSLS ISQVALGWHH ALVLSGGELY TIGAYRHQKC DPTVSEDTVA QQLHLTTTSS THHESSSVSS LAKGPSIHGE QVTRIAAGTE HSAMITDSGA
401: LYTWGWGEHG QLGLGDTCDQ VVPQMVNLGD EGSRSPASLG VYCGSGFTIA VNLA
101: PPRCRGRVSF IAGGGAHAIA LTSDGEVFTW GRGTHGQLGH GNLENIAHPK FVKFFENYTV TCVSTGWNHS GFATDSGQLF MCGDGSFGQL GTGDNQSRNL
201: PFEVSSFTTK HVEKLAFGMR HSLVLLKDNS VYGFGSGRRG QVGKSASKNQ KIYSIPRLID GFPNCKIVNL YANGDHSAAL DESGQLYIWG RALVGEHDDD
301: QPRAAFPSLS ISQVALGWHH ALVLSGGELY TIGAYRHQKC DPTVSEDTVA QQLHLTTTSS THHESSSVSS LAKGPSIHGE QVTRIAAGTE HSAMITDSGA
401: LYTWGWGEHG QLGLGDTCDQ VVPQMVNLGD EGSRSPASLG VYCGSGFTIA VNLA
001: MAEHGETQAD EEEEEQVWSW GAGTDGQLGT TKLQDELLPQ LLSLTSLPSI SMLACGGAHV IALTSGGKVF TWGRGSSGQL GHGDILNITL PKLVSFFDDS
101: VITQAAAGWS HSGFVSDSGC IFTCGNGSFG QLGHGDTLSL STPAKVSHFN NDSVKMVACG MRHSLVLFAG NQVCGFGSGK RGQLGFSSDR IKSVNLPCVV
201: SGLKDVEVVR ISANGDHSAA ISADGQFFSW GRGFCGGPDV HAPQSLPSPL SFREVAVGWN HALLLTVDGE VFKLGSTLNK QPEKQQLQID SSEALFEKVP
301: DFDGVKVMQI AAGAEHSAAV TENGEVKTWG WGEHGQLGLG NTNDQTSPEL VSLGSIDLRT KEIKVYCGSG FTYAVKRKQE LSPTSS
101: VITQAAAGWS HSGFVSDSGC IFTCGNGSFG QLGHGDTLSL STPAKVSHFN NDSVKMVACG MRHSLVLFAG NQVCGFGSGK RGQLGFSSDR IKSVNLPCVV
201: SGLKDVEVVR ISANGDHSAA ISADGQFFSW GRGFCGGPDV HAPQSLPSPL SFREVAVGWN HALLLTVDGE VFKLGSTLNK QPEKQQLQID SSEALFEKVP
301: DFDGVKVMQI AAGAEHSAAV TENGEVKTWG WGEHGQLGLG NTNDQTSPEL VSLGSIDLRT KEIKVYCGSG FTYAVKRKQE LSPTSS
Arabidopsis Description
At1g27060 [Source:UniProtKB/TrEMBL;Acc:A2RVN2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.