Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1D01G078800.1 | Wheat | mitochondrion | 96.73 | 91.65 |
| TraesCS1A01G076400.1 | Wheat | mitochondrion | 96.47 | 91.41 |
| EES09892 | Sorghum | mitochondrion | 83.12 | 78.95 |
| Os11t0545800-01 | Rice | mitochondrion | 84.38 | 78.82 |
| Zm00001d052624_P007 | Maize | plastid | 77.33 | 67.03 |
| GSMUA_Achr10P... | Banana | mitochondrion | 66.5 | 62.86 |
| KRH63955 | Soybean | mitochondrion | 58.69 | 55.88 |
| VIT_07s0031g02850.t01 | Wine grape | mitochondrion | 58.94 | 55.71 |
| KRH53977 | Soybean | cytosol, mitochondrion, nucleus | 44.84 | 55.62 |
| CDY44785 | Canola | mitochondrion | 57.18 | 52.42 |
| Solyc05g056590.2.1 | Tomato | cytosol | 36.02 | 52.0 |
| Bra028647.1-P | Field mustard | mitochondrion | 57.18 | 51.95 |
| CDY40735 | Canola | mitochondrion | 57.18 | 51.95 |
| AT5G08710.1 | Thale cress | mitochondrion | 56.68 | 51.84 |
| HORVU2Hr1G076180.1 | Barley | cytosol, endoplasmic reticulum | 26.45 | 23.81 |
| HORVU7Hr1G062090.6 | Barley | cytosol | 24.43 | 23.43 |
| HORVU3Hr1G076310.2 | Barley | cytosol, mitochondrion, nucleus | 26.7 | 23.35 |
| HORVU5Hr1G053180.5 | Barley | cytosol | 26.95 | 22.29 |
| HORVU6Hr1G030600.2 | Barley | plasma membrane | 24.43 | 21.95 |
| HORVU0Hr1G028990.2 | Barley | cytosol | 20.4 | 20.56 |
| HORVU3Hr1G108180.1 | Barley | mitochondrion | 8.56 | 20.36 |
| HORVU5Hr1G089510.1 | Barley | cytosol | 17.88 | 19.72 |
| HORVU5Hr1G034530.6 | Barley | cytosol | 22.67 | 16.85 |
| HORVU2Hr1G083590.1 | Barley | cytosol | 17.63 | 15.56 |
| HORVU3Hr1G112690.2 | Barley | cytosol, plastid | 27.96 | 12.22 |
| HORVU1Hr1G002740.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 27.71 | 12.13 |
| HORVU7Hr1G038070.12 | Barley | cytosol | 27.2 | 11.45 |
| HORVU3Hr1G107820.4 | Barley | endoplasmic reticulum | 30.48 | 11.01 |
| HORVU1Hr1G078890.1 | Barley | cytosol | 28.97 | 10.94 |
| HORVU1Hr1G056870.2 | Barley | cytosol, endoplasmic reticulum, nucleus | 30.48 | 10.76 |
| HORVU2Hr1G124270.22 | Barley | cytosol, mitochondrion, nucleus | 26.45 | 9.76 |
| HORVU6Hr1G066460.5 | Barley | cytosol | 25.19 | 9.37 |
| HORVU2Hr1G104550.10 | Barley | cytosol, nucleus, plastid | 26.2 | 9.0 |
Protein Annotations
| EnsemblPlants:HORVU1Hr1G016430.4 | EnsemblPlantsGene:HORVU1Hr1G016430 | Gene3D:2.130.10.30 | InterPro:IPR000408 | InterPro:IPR009091 | InterPro:RCC1/BLIP-II |
| InterPro:Reg_chr_condens | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF245 | PFAM:PF00415 | PFAM:PF13540 | PFscan:PS50012 |
| PRINTS:PR00633 | ScanProsite:PS00626 | SEG:seg | SUPFAM:SSF50985 | UniParc:UPI000B46CAA7 | UniProt:A0A287EQZ5 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr1H:+:52356334..52374759
Molecular Weight (calculated)
42000.5 Da
IEP (calculated)
6.688
GRAVY (calculated)
-0.177
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: DPGHPARRRV AALWGNGDHG RLGLGALESR WSPTACPFFL ARPADPPASL SCGGAHTLFL TEGGRVFATG LNDFGQLGIG SSMPHTLDPV EVSGFHEKVV
101: QISAGNHHSC AVTADGELFV WGKNSSGQLG LGKSAGKVVS TPRKVDYLAD VRVKMTALGS EHSIVVTEDG EALSWGAAGG GRLGHGHKSS FLGFAMTSNE
201: YTPRLIKNLD GIKIKRIAAG MLHSACIDEK GTVFIFGQKT EKVLGRSNDA PRPSVVEEIQ FSEEVACGGY HTCAVTDRGD LYSWGSNENG CLGLGGTGMV
301: RFPEVVSSSL FKLPVSKVSC GWKHTAVISG EDIYTWGWGG ANGTFFEEGH SSGGQLGHGN DVDYCEPMMV ELHKNARAVH VSCGFNHTGA ILEYAEN
101: QISAGNHHSC AVTADGELFV WGKNSSGQLG LGKSAGKVVS TPRKVDYLAD VRVKMTALGS EHSIVVTEDG EALSWGAAGG GRLGHGHKSS FLGFAMTSNE
201: YTPRLIKNLD GIKIKRIAAG MLHSACIDEK GTVFIFGQKT EKVLGRSNDA PRPSVVEEIQ FSEEVACGGY HTCAVTDRGD LYSWGSNENG CLGLGGTGMV
301: RFPEVVSSSL FKLPVSKVSC GWKHTAVISG EDIYTWGWGG ANGTFFEEGH SSGGQLGHGN DVDYCEPMMV ELHKNARAVH VSCGFNHTGA ILEYAEN
001: MLTRAIGRVR IPVSRIQGSN CTSGLLKDSK LGPIGVCCSR WVSSESGKRF AAMWGSGDYG RLGLGNLDSQ WTPAVCSALS DHSITAVACG GAHTLFLTET
101: RRVFATGLND CGQLGVSDVK SHAMDPLEVS GLDKDILHIS AGYYHSAAIT VDGELYMWGK NSSGQLGLGK KAARVVRVPT KVEALHGITI QSVALGSEHS
201: VAVTDGGEVL SWGGGGSGRL GHGHQSSLFG ILRSNSEFTP RLIKELEGIK VTNVAAGLLH SACTDENGSA FMFGEKSINK MGFGGVRNAT TPSIISEVPY
301: AEEVACGGYH TCVVTRGGEL YTWGSNENGC LGTDSTYVSH SPVRVEGPFL ESTVSQVSCG WKHTAAISDN NVFTWGWGGS HGTFSVDGHS SGGQLGHGSD
401: VDYARPAMVD LGKNVRAVHI SCGFNHTAAV LEHF
101: RRVFATGLND CGQLGVSDVK SHAMDPLEVS GLDKDILHIS AGYYHSAAIT VDGELYMWGK NSSGQLGLGK KAARVVRVPT KVEALHGITI QSVALGSEHS
201: VAVTDGGEVL SWGGGGSGRL GHGHQSSLFG ILRSNSEFTP RLIKELEGIK VTNVAAGLLH SACTDENGSA FMFGEKSINK MGFGGVRNAT TPSIISEVPY
301: AEEVACGGYH TCVVTRGGEL YTWGSNENGC LGTDSTYVSH SPVRVEGPFL ESTVSQVSCG WKHTAAISDN NVFTWGWGGS HGTFSVDGHS SGGQLGHGSD
401: VDYARPAMVD LGKNVRAVHI SCGFNHTAAV LEHF
Arabidopsis Description
RUG1 [Source:UniProtKB/TrEMBL;Acc:A0A178UAH3]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.