Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_07s0031g02850.t01 | Wine grape | mitochondrion | 64.0 | 41.9 |
| KRH63955 | Soybean | mitochondrion | 61.82 | 40.77 |
| CDY44785 | Canola | mitochondrion | 62.55 | 39.72 |
| AT5G08710.1 | Thale cress | mitochondrion | 61.82 | 39.17 |
| Bra028647.1-P | Field mustard | mitochondrion | 62.18 | 39.13 |
| CDY40735 | Canola | mitochondrion | 62.18 | 39.13 |
| GSMUA_Achr10P... | Banana | mitochondrion | 57.82 | 37.86 |
| KRH53977 | Soybean | cytosol, mitochondrion, nucleus | 43.64 | 37.5 |
| HORVU1Hr1G016430.4 | Barley | cytosol | 52.0 | 36.02 |
| EES09892 | Sorghum | mitochondrion | 54.55 | 35.89 |
| Os11t0545800-01 | Rice | mitochondrion | 54.18 | 35.06 |
| TraesCS1D01G078800.1 | Wheat | mitochondrion | 51.64 | 33.89 |
| TraesCS1A01G076400.1 | Wheat | mitochondrion | 51.64 | 33.89 |
| Zm00001d052624_P007 | Maize | plastid | 52.73 | 31.66 |
| Solyc05g018620.2.1 | Tomato | cytosol | 24.73 | 22.15 |
| Solyc02g089220.2.1 | Tomato | mitochondrion | 23.27 | 19.39 |
| Solyc07g042980.2.1 | Tomato | cytosol | 16.73 | 18.93 |
| Solyc02g085780.2.1 | Tomato | cytosol | 23.64 | 16.67 |
| Solyc05g006940.2.1 | Tomato | cytosol | 21.09 | 14.72 |
| Solyc07g063300.2.1 | Tomato | plasma membrane | 22.55 | 12.76 |
| Solyc05g014030.2.1 | Tomato | cytosol | 22.91 | 11.82 |
| Solyc02g036390.1.1 | Tomato | cytosol | 26.55 | 9.3 |
| Solyc03g116360.1.1 | Tomato | cytosol | 28.36 | 8.25 |
| Solyc05g007290.1.1 | Tomato | endoplasmic reticulum | 29.09 | 7.93 |
| Solyc12g099740.1.1 | Tomato | nucleus | 29.09 | 7.8 |
| Solyc11g065120.1.1 | Tomato | cytosol | 30.91 | 7.53 |
| Solyc04g071040.2.1 | Tomato | cytosol | 29.09 | 7.1 |
| Solyc03g005590.1.1 | Tomato | cytosol, plastid | 27.64 | 7.1 |
| Solyc07g042970.2.1 | Tomato | mitochondrion | 3.64 | 4.15 |
| Solyc02g081250.1.1 | Tomato | cytosol | 28.0 | 3.69 |
| Solyc05g007280.2.1 | Tomato | cytosol | 0.73 | 3.39 |
Protein Annotations
| EnsemblPlants:Solyc05g056590.2.1 | EnsemblPlantsGene:Solyc05g056590.2 | Gene3D:2.130.10.30 | InterPro:IPR000408 | InterPro:IPR009091 | InterPro:RCC1/BLIP-II |
| InterPro:Reg_chr_condens | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF245 | PFAM:PF00415 | PFscan:PS50012 | PRINTS:PR00633 |
| SEG:seg | SUPFAM:SSF50985 | UniParc:UPI0002765929 | UniProt:K4C2Y3 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr5:+:65850117..65870704
Molecular Weight (calculated)
29106.4 Da
IEP (calculated)
7.152
GRAVY (calculated)
-0.166
Length
275 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSLALERNK ADTVLSIPNK VECLNGVTIK IISLGFEHSI AVTDKGETLS WGGGQSGRLG HGHQSGIFGL IKSDSEYTPR LIKELEGLKV KNASAGMLHS
101: VCISATENGS VHIFGERANK KLGFSEASNC SLPSVVDGLP YAEKAACGGY HTCVITGGGE LYVWGTNENG CLGIGSTDVA HLPERVEGPF LRHSVSEVSC
201: GWKHTAAISG GNVYTWGWGG SHGTFSVDGH SSGGQLGQGN DVDYIKPTKI NFRRHVKALQ VSCGFNHTGA IFEYN
101: VCISATENGS VHIFGERANK KLGFSEASNC SLPSVVDGLP YAEKAACGGY HTCVITGGGE LYVWGTNENG CLGIGSTDVA HLPERVEGPF LRHSVSEVSC
201: GWKHTAAISG GNVYTWGWGG SHGTFSVDGH SSGGQLGQGN DVDYIKPTKI NFRRHVKALQ VSCGFNHTGA IFEYN
001: MLTRAIGRVR IPVSRIQGSN CTSGLLKDSK LGPIGVCCSR WVSSESGKRF AAMWGSGDYG RLGLGNLDSQ WTPAVCSALS DHSITAVACG GAHTLFLTET
101: RRVFATGLND CGQLGVSDVK SHAMDPLEVS GLDKDILHIS AGYYHSAAIT VDGELYMWGK NSSGQLGLGK KAARVVRVPT KVEALHGITI QSVALGSEHS
201: VAVTDGGEVL SWGGGGSGRL GHGHQSSLFG ILRSNSEFTP RLIKELEGIK VTNVAAGLLH SACTDENGSA FMFGEKSINK MGFGGVRNAT TPSIISEVPY
301: AEEVACGGYH TCVVTRGGEL YTWGSNENGC LGTDSTYVSH SPVRVEGPFL ESTVSQVSCG WKHTAAISDN NVFTWGWGGS HGTFSVDGHS SGGQLGHGSD
401: VDYARPAMVD LGKNVRAVHI SCGFNHTAAV LEHF
101: RRVFATGLND CGQLGVSDVK SHAMDPLEVS GLDKDILHIS AGYYHSAAIT VDGELYMWGK NSSGQLGLGK KAARVVRVPT KVEALHGITI QSVALGSEHS
201: VAVTDGGEVL SWGGGGSGRL GHGHQSSLFG ILRSNSEFTP RLIKELEGIK VTNVAAGLLH SACTDENGSA FMFGEKSINK MGFGGVRNAT TPSIISEVPY
301: AEEVACGGYH TCVVTRGGEL YTWGSNENGC LGTDSTYVSH SPVRVEGPFL ESTVSQVSCG WKHTAAISDN NVFTWGWGGS HGTFSVDGHS SGGQLGHGSD
401: VDYARPAMVD LGKNVRAVHI SCGFNHTAAV LEHF
Arabidopsis Description
RUG1 [Source:UniProtKB/TrEMBL;Acc:A0A178UAH3]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.