Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 4
- endoplasmic reticulum 6
- vacuole 4
- plasma membrane 5
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g116360.1.1 | Tomato | cytosol | 45.99 | 49.05 |
| Solyc11g065120.1.1 | Tomato | cytosol | 52.53 | 46.94 |
| Solyc12g099740.1.1 | Tomato | nucleus | 46.58 | 45.85 |
| Solyc02g036390.1.1 | Tomato | cytosol | 31.71 | 40.76 |
| Solyc04g071040.2.1 | Tomato | cytosol | 42.52 | 38.1 |
| Solyc03g005590.1.1 | Tomato | cytosol, plastid | 39.74 | 37.44 |
| Solyc05g018620.2.1 | Tomato | cytosol | 9.91 | 32.57 |
| Solyc07g042980.2.1 | Tomato | cytosol | 7.14 | 29.63 |
| Solyc05g006940.2.1 | Tomato | cytosol | 11.4 | 29.19 |
| Solyc05g056590.2.1 | Tomato | cytosol | 7.93 | 29.09 |
| Solyc07g042970.2.1 | Tomato | mitochondrion | 6.84 | 28.63 |
| Solyc02g085780.2.1 | Tomato | cytosol | 10.31 | 26.67 |
| Solyc05g014030.2.1 | Tomato | cytosol | 13.68 | 25.89 |
| Solyc07g063300.2.1 | Tomato | plasma membrane | 11.6 | 24.07 |
| Solyc02g089220.2.1 | Tomato | mitochondrion | 7.73 | 23.64 |
| Solyc02g081250.1.1 | Tomato | cytosol | 34.29 | 16.58 |
| Solyc05g007280.2.1 | Tomato | cytosol | 0.0 | 0.0 |
Protein Annotations
| Gene3D:2.130.10.30 | Gene3D:2.30.29.30 | Gene3D:3.30.40.10 | MapMan:35.1 | ncoils:Coil | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0046872 | InterPro:IPR000408 |
| InterPro:IPR009091 | InterPro:IPR011993 | InterPro:IPR013083 | InterPro:IPR017455 | UniProt:K4BWQ5 | PFAM:PF00415 |
| PFAM:PF01363 | InterPro:PH-like_dom_sf | PRINTS:PR00633 | ScanProsite:PS00626 | PFscan:PS50012 | PFscan:PS50178 |
| PANTHER:PTHR22870 | PANTHER:PTHR22870:SF325 | InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens | SMART:SM00064 | SUPFAM:SSF50729 |
| SUPFAM:SSF50985 | SUPFAM:SSF57903 | EnsemblPlantsGene:Solyc05g007290.1 | EnsemblPlants:Solyc05g007290.1.1 | TMHMM:TMhelix | UniParc:UPI0002765AA3 |
| InterPro:Znf_FYVE | InterPro:Znf_FYVE-rel | InterPro:Znf_FYVE_PHD | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : |
Description
No Description!
Coordinates
chr5:-:1944633..1951051
Molecular Weight (calculated)
109496.0 Da
IEP (calculated)
9.076
GRAVY (calculated)
-0.243
Length
1009 amino acids
Sequence
(BLAST)
(BLAST)
0001: MKEFGVVVFV AKGIGYCVFC IWGVLVRGKL FPVVFQMGFG STVGVFHLIV LPLEWLISKG LVLLIGTLIS IFGGFEQHVY RAIAALKKGA NLLKYGRRGK
0101: PKFCPFRLSN VTHGSRGQKK ALKSLKDESA VVWYHDKEEK QLELCHVSRI IPGQRTAIFQ RYPRPEKEYQ SFSLICNDRS LDLICKDKDE AEVWITGLKA
0201: IITRGRSRRG KYDARSETMF SDSPLGQRVT TSTSSIDQGD NQRTESLPQS RLGKAYADII QYTAAGKSPT LAETGSFNLS SLSAGAIDNS NARSSTADTF
0301: RVSLSSALSS SSQGSCLEDF DNLGDVFIWG EGTGNGLLGG GKHRIGKSSG TRIDANIPKS LESSVVLDVQ NIACGNRHAM LVTKQGEAFS WGEEAGGRLG
0401: HGAETDVSHP KLIKNFKGMN VEMIACGEYH SCAVTSSGDL YTWGDGTKSS GLLGHRSEAS HWIPKKVCGL MEGLRVSHVS CGPWHTALIT SAGRLFTFGD
0501: GTFGALGHGD RSGCITPREV ETFNGLKTLK VACGVWHTAA VVELMSGLDS RPSDAPSGTL FTWGDGDKGK LGHGDNKPRL APESIAALVD KSFSQVACGY
0601: AMTVALTTAG RVYTMGSNVY GQLGSPLADG MSPICVEDYF VDSTVEEISC GSHHVAVLTS KTEVYTWGKG ENGQLGHGDC ENKCTPTLVD ILRDKQVKRI
0701: VCGSNFSAAI CVHNWALSAD NSICFGCRIP FNFRRKRHNC YNCGFVFCKA CSSKKSLKAS LAPSTNKPYR VCDDCFDKLQ KAIESEPFSR VPKVKAGNAL
0801: YKANEQTDKE SGLPLLVGLT SRLSSSDSFN RAQGRISRVD QYENRASSFQ TENTPRESFS LSKSPISAFR VSKSLFSASL PSTRVVSQST SPLLGKASAL
0901: WPAIPASYPP VRTAEVVEDN LKPINDSLSL EVKQLKAQVS YFYVAYRQEE EMRKLASKSQ LLEAELGRKT KQLKDATAKA AVEAEKRRAA KHVIKSLTAQ
1001: VSLSLNSDA
0101: PKFCPFRLSN VTHGSRGQKK ALKSLKDESA VVWYHDKEEK QLELCHVSRI IPGQRTAIFQ RYPRPEKEYQ SFSLICNDRS LDLICKDKDE AEVWITGLKA
0201: IITRGRSRRG KYDARSETMF SDSPLGQRVT TSTSSIDQGD NQRTESLPQS RLGKAYADII QYTAAGKSPT LAETGSFNLS SLSAGAIDNS NARSSTADTF
0301: RVSLSSALSS SSQGSCLEDF DNLGDVFIWG EGTGNGLLGG GKHRIGKSSG TRIDANIPKS LESSVVLDVQ NIACGNRHAM LVTKQGEAFS WGEEAGGRLG
0401: HGAETDVSHP KLIKNFKGMN VEMIACGEYH SCAVTSSGDL YTWGDGTKSS GLLGHRSEAS HWIPKKVCGL MEGLRVSHVS CGPWHTALIT SAGRLFTFGD
0501: GTFGALGHGD RSGCITPREV ETFNGLKTLK VACGVWHTAA VVELMSGLDS RPSDAPSGTL FTWGDGDKGK LGHGDNKPRL APESIAALVD KSFSQVACGY
0601: AMTVALTTAG RVYTMGSNVY GQLGSPLADG MSPICVEDYF VDSTVEEISC GSHHVAVLTS KTEVYTWGKG ENGQLGHGDC ENKCTPTLVD ILRDKQVKRI
0701: VCGSNFSAAI CVHNWALSAD NSICFGCRIP FNFRRKRHNC YNCGFVFCKA CSSKKSLKAS LAPSTNKPYR VCDDCFDKLQ KAIESEPFSR VPKVKAGNAL
0801: YKANEQTDKE SGLPLLVGLT SRLSSSDSFN RAQGRISRVD QYENRASSFQ TENTPRESFS LSKSPISAFR VSKSLFSASL PSTRVVSQST SPLLGKASAL
0901: WPAIPASYPP VRTAEVVEDN LKPINDSLSL EVKQLKAQVS YFYVAYRQEE EMRKLASKSQ LLEAELGRKT KQLKDATAKA AVEAEKRRAA KHVIKSLTAQ
1001: VSLSLNSDA
0001: MSRNGRMTPS DLSRAGPVTR DIEQAITALK KGAYLLKYGR RGKPKFCPFR LSNDESVLIW FSGKEEKHLK LSHVSRIISG QRTPIFQRYP RPEKEYQSFS
0101: LIYDERSLDL ICKDKDEAEV WFSGLKALIS RCHQRKWRTE SRSDGTPSEA NSPRTYTRRS SPLHSPFSSN ESFQKEGSNH LRLHSPYESP PKNGVDKAFS
0201: DMSLYAVPPK GFFPPGSATM SVHSLSSGGS DTLHGHMKGM GMDAFRVSLS SAISSSSHGS GHDDGDTLGD VFMWGEGIGE GVLGGGNHRV GSSLEIKMDS
0301: LLPKALESTI VLDVQNIACG GQHAVLVTKQ GESFSWGEES EGRLGHGVDS NVQHPKLIDA LNTTNIELVA CGEYHSCAVT LSGDLYTWGK GDFGILGHGN
0401: EVSHWVPKRV NFLMEGIHVS SIACGPYHTA VVTSAGQLFT FGDGTFGVLG HGDRKSVFIP REVDSLKGLR TVRAACGVWH TAAVVEVMVG SSSSSNCSSG
0501: KLFTWGDGDK SRLGHGDKEP KLVPTCVAAL VEPNFCQVAC GHSLTVALTT SGHVYTMGSP VYGQLGNPHA DGKVPTRVDG KLHKSFVEEI ACGAYHVAVL
0601: TSRTEVYTWG KGSNGRLGHG DADDRNSPTL VESLKDKQVK SIACGSNFTA AVCLHKWASG MDQSMCSGCR QPFNFKRKRH NCYNCGLVFC HSCSNKKSLK
0701: ACMAPNPNKP YRVCDRCFNK LKKAMETDPS SHSSLSRRES VNQGSDAIDR DEKLDTRSDG QLARFSLLEP MRQVDSRSKK NKKYEFNSSR VSPIPSGGSH
0801: RGSLNITKSF NPTFGSSKKF FSASVPGSRI ASRATSPISR RPSPPRSTTP TPTLSGLTTP KIVVDDTKRS NDNLSQEVVM LRSQVENLTR KAQLQEVELE
0901: RTTKQLKEAL AIASEESARC KAAKEVIKSL TAQLKDMAER LPVGSARTVK SPSLNSFGSS PDYAAPSSNT LNRPNSRETD SDSLTTVPMF SNGTSTPVFD
1001: SGSYRQQANH AAEAINRIST RSKESEPRNE NEWVEQDEPG VYITLTALAG GARDLKRVRF SRKRFSEKQA EEWWAENRGR VYEQYNVRIV VDKSSVGVGS
1101: EDLGH
0101: LIYDERSLDL ICKDKDEAEV WFSGLKALIS RCHQRKWRTE SRSDGTPSEA NSPRTYTRRS SPLHSPFSSN ESFQKEGSNH LRLHSPYESP PKNGVDKAFS
0201: DMSLYAVPPK GFFPPGSATM SVHSLSSGGS DTLHGHMKGM GMDAFRVSLS SAISSSSHGS GHDDGDTLGD VFMWGEGIGE GVLGGGNHRV GSSLEIKMDS
0301: LLPKALESTI VLDVQNIACG GQHAVLVTKQ GESFSWGEES EGRLGHGVDS NVQHPKLIDA LNTTNIELVA CGEYHSCAVT LSGDLYTWGK GDFGILGHGN
0401: EVSHWVPKRV NFLMEGIHVS SIACGPYHTA VVTSAGQLFT FGDGTFGVLG HGDRKSVFIP REVDSLKGLR TVRAACGVWH TAAVVEVMVG SSSSSNCSSG
0501: KLFTWGDGDK SRLGHGDKEP KLVPTCVAAL VEPNFCQVAC GHSLTVALTT SGHVYTMGSP VYGQLGNPHA DGKVPTRVDG KLHKSFVEEI ACGAYHVAVL
0601: TSRTEVYTWG KGSNGRLGHG DADDRNSPTL VESLKDKQVK SIACGSNFTA AVCLHKWASG MDQSMCSGCR QPFNFKRKRH NCYNCGLVFC HSCSNKKSLK
0701: ACMAPNPNKP YRVCDRCFNK LKKAMETDPS SHSSLSRRES VNQGSDAIDR DEKLDTRSDG QLARFSLLEP MRQVDSRSKK NKKYEFNSSR VSPIPSGGSH
0801: RGSLNITKSF NPTFGSSKKF FSASVPGSRI ASRATSPISR RPSPPRSTTP TPTLSGLTTP KIVVDDTKRS NDNLSQEVVM LRSQVENLTR KAQLQEVELE
0901: RTTKQLKEAL AIASEESARC KAAKEVIKSL TAQLKDMAER LPVGSARTVK SPSLNSFGSS PDYAAPSSNT LNRPNSRETD SDSLTTVPMF SNGTSTPVFD
1001: SGSYRQQANH AAEAINRIST RSKESEPRNE NEWVEQDEPG VYITLTALAG GARDLKRVRF SRKRFSEKQA EEWWAENRGR VYEQYNVRIV VDKSSVGVGS
1101: EDLGH
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4K148]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.