Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 4
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc12g099740.1.1 | Tomato | nucleus | 55.93 | 3.22 |
| Solyc11g065120.1.1 | Tomato | cytosol | 54.24 | 2.83 |
| Solyc04g071040.2.1 | Tomato | cytosol | 52.54 | 2.75 |
| Solyc03g005590.1.1 | Tomato | cytosol, plastid | 42.37 | 2.33 |
| Solyc02g081250.1.1 | Tomato | cytosol | 45.76 | 1.29 |
| Solyc02g089220.2.1 | Tomato | mitochondrion | 6.78 | 1.21 |
| Solyc05g056590.2.1 | Tomato | cytosol | 3.39 | 0.73 |
| Solyc05g018620.2.1 | Tomato | cytosol | 3.39 | 0.65 |
| Solyc05g006940.2.1 | Tomato | cytosol | 1.69 | 0.25 |
| Solyc03g116360.1.1 | Tomato | cytosol | 3.39 | 0.21 |
| Solyc05g014030.2.1 | Tomato | cytosol | 1.69 | 0.19 |
| Solyc05g007290.1.1 | Tomato | endoplasmic reticulum | 0.0 | 0.0 |
| Solyc07g042970.2.1 | Tomato | mitochondrion | 0.0 | 0.0 |
| Solyc07g042980.2.1 | Tomato | cytosol | 0.0 | 0.0 |
| Solyc07g063300.2.1 | Tomato | plasma membrane | 0.0 | 0.0 |
| Solyc02g085780.2.1 | Tomato | cytosol | 0.0 | 0.0 |
| Solyc02g036390.1.1 | Tomato | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Solyc05g007280.2.1 | EnsemblPlantsGene:Solyc05g007280.2 | InterPro:Brevis_radix_dom | InterPro:IPR013591 | PFAM:PF08381 | PFscan:PS51514 |
| UniParc:UPI0002765AA2 | UniProt:K4BWQ4 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr5:-:1942757..1944753
Molecular Weight (calculated)
6989.3 Da
IEP (calculated)
5.021
GRAVY (calculated)
-0.742
Length
59 amino acids
Sequence
(BLAST)
(BLAST)
1: MLQVEPGVYL YLISLPDGGN ELKRVRFSRK CFSEDEAEKW WNENGQKICE KYNITPEHV
0001: MCILELRLFA AASMADSLRT SFSERDVEQA ITSLKKGSYL LKYGRRGKPK FCPFQLTSDE SALVWYSGKE EKQIKLSQVL RIVPGQRTPT FKRYPRPEKE
0101: YQSFSLICPD RSLDLICKDK DEAEVWVVGL KSLITRVKVS KWKTTIKPEI TSAECPTPHA RRVSPFVTIL DQVIQPSNET STQTRLGKVF SDIVAITAPP
0201: SNNNQTEASG NLFCPFSPTP ANVENSNLRF STNDPFRLSL SSAVSTSSHG SYHEDFDALG DVFVWGESIS DGVLSGTGNS LNSTTEDALL PKALESTIVL
0301: DAQNIACGKC HAVLVTKQGE IFSWGEGKGG KLGHGLETDA QKPKFISSVR GLGFKSLACG DFHTCAITQS GDLYSWGDGT HNVDLLGHGN ESSCWIPKRV
0401: TGDLQGLYVS DVACGPWHTA VVASSGQLFT FGDGTFGALG HGDRRSTSVP REVESLIGLI VTKVACGVWH TAAVVEVTNE ASEAEVDSSR GQVFTWGDGE
0501: KGQLGHGDND TKLLPECVIS LTNENICQVA CGHSLTVSRT SRGHVYTMGS TAYGQLGNPT AKGNFPERVE GDIVEASVEE IACGSYHVAV LTSKSEIYTW
0601: GKGLNGQLGH GNVENKREPA VVGFLREKQV KAITCGSNFT AVICVHKWVP GSEHSLCAGC RNPFNFRRKR HNCYNCGLVF CKVCSSRKSL RAALAPDMNK
0701: PYRVCYGCFT KLKKSRESSP STPTSRTRKL LNMRKSTDVS ERDSLTQKFL SVNARLSSAD SSLHYSERRH HRRDLKPEVN NSNVFPSMNG SLQPVGSPFS
0801: KGSTALPKIP KNMMVKIPGS GMSSRTTSPV SVKSTSPRRS YEVAAAESKQ LKDSFNQDMA GLKEQVEQLA SKAHQLEEEL EKTKRQLKVV TAMAADEAEE
0901: NRSAKEVIRS LTTQLKEMAE KQSQKDSIST NSKHTDKEKS ETVTQTSNQT HIRSMVSQDS QNENNLTSKS FANGHRKQND KPEKVVQDEP GVYLTLLSLP
1001: GGGTELKRVR FSRKQFTEEQ AEKWWGENGA KVCERHNILV S
0101: YQSFSLICPD RSLDLICKDK DEAEVWVVGL KSLITRVKVS KWKTTIKPEI TSAECPTPHA RRVSPFVTIL DQVIQPSNET STQTRLGKVF SDIVAITAPP
0201: SNNNQTEASG NLFCPFSPTP ANVENSNLRF STNDPFRLSL SSAVSTSSHG SYHEDFDALG DVFVWGESIS DGVLSGTGNS LNSTTEDALL PKALESTIVL
0301: DAQNIACGKC HAVLVTKQGE IFSWGEGKGG KLGHGLETDA QKPKFISSVR GLGFKSLACG DFHTCAITQS GDLYSWGDGT HNVDLLGHGN ESSCWIPKRV
0401: TGDLQGLYVS DVACGPWHTA VVASSGQLFT FGDGTFGALG HGDRRSTSVP REVESLIGLI VTKVACGVWH TAAVVEVTNE ASEAEVDSSR GQVFTWGDGE
0501: KGQLGHGDND TKLLPECVIS LTNENICQVA CGHSLTVSRT SRGHVYTMGS TAYGQLGNPT AKGNFPERVE GDIVEASVEE IACGSYHVAV LTSKSEIYTW
0601: GKGLNGQLGH GNVENKREPA VVGFLREKQV KAITCGSNFT AVICVHKWVP GSEHSLCAGC RNPFNFRRKR HNCYNCGLVF CKVCSSRKSL RAALAPDMNK
0701: PYRVCYGCFT KLKKSRESSP STPTSRTRKL LNMRKSTDVS ERDSLTQKFL SVNARLSSAD SSLHYSERRH HRRDLKPEVN NSNVFPSMNG SLQPVGSPFS
0801: KGSTALPKIP KNMMVKIPGS GMSSRTTSPV SVKSTSPRRS YEVAAAESKQ LKDSFNQDMA GLKEQVEQLA SKAHQLEEEL EKTKRQLKVV TAMAADEAEE
0901: NRSAKEVIRS LTTQLKEMAE KQSQKDSIST NSKHTDKEKS ETVTQTSNQT HIRSMVSQDS QNENNLTSKS FANGHRKQND KPEKVVQDEP GVYLTLLSLP
1001: GGGTELKRVR FSRKQFTEEQ AEKWWGENGA KVCERHNILV S
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I287]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.