Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400045467 | Potato | cytosol | 94.67 | 93.95 |
| VIT_01s0026g01520.t01 | Wine grape | cytosol | 59.9 | 59.6 |
| CDY69131 | Canola | cytosol | 46.19 | 56.7 |
| CDY16215 | Canola | cytosol | 55.33 | 56.48 |
| Bra024664.1-P | Field mustard | cytosol | 51.02 | 55.99 |
| CDY46423 | Canola | cytosol | 53.81 | 55.94 |
| Bra016304.1-P | Field mustard | cytosol | 52.28 | 55.83 |
| AT1G27060.1 | Thale cress | cytosol | 53.55 | 54.66 |
| GSMUA_Achr6P29750_001 | Banana | cytosol | 52.54 | 52.14 |
| TraesCS3B01G347100.2 | Wheat | cytosol | 50.25 | 48.65 |
| TraesCS3A01G319000.1 | Wheat | cytosol | 50.25 | 48.29 |
| Os01t0777800-01 | Rice | cytosol | 48.73 | 47.88 |
| OQU87663 | Sorghum | cytosol | 48.98 | 47.77 |
| TraesCS3D01G312300.1 | Wheat | cytosol | 49.24 | 47.67 |
| Zm00001d043280_P001 | Maize | cytosol | 48.48 | 46.81 |
| HORVU3Hr1G076310.2 | Barley | cytosol, mitochondrion, nucleus | 49.24 | 42.73 |
| KRH74759 | Soybean | nucleus | 55.33 | 38.72 |
| KRH69375 | Soybean | nucleus | 56.85 | 37.9 |
| CDY14709 | Canola | nucleus | 53.81 | 30.68 |
| Solyc02g085780.2.1 | Tomato | cytosol | 24.62 | 24.87 |
| Solyc05g018620.2.1 | Tomato | cytosol | 16.75 | 21.5 |
| Solyc05g056590.2.1 | Tomato | cytosol | 14.72 | 21.09 |
| Solyc07g042970.2.1 | Tomato | mitochondrion | 12.69 | 20.75 |
| Solyc07g063300.2.1 | Tomato | plasma membrane | 23.6 | 19.14 |
| Solyc07g042980.2.1 | Tomato | cytosol | 11.17 | 18.11 |
| Solyc02g089220.2.1 | Tomato | mitochondrion | 14.47 | 17.27 |
| Solyc05g014030.2.1 | Tomato | cytosol | 22.08 | 16.32 |
| Solyc02g036390.1.1 | Tomato | cytosol | 26.65 | 13.38 |
| Solyc03g116360.1.1 | Tomato | cytosol | 28.68 | 11.95 |
| Solyc12g099740.1.1 | Tomato | nucleus | 29.95 | 11.51 |
| Solyc05g007290.1.1 | Tomato | endoplasmic reticulum | 29.19 | 11.4 |
| Solyc03g005590.1.1 | Tomato | cytosol, plastid | 30.46 | 11.2 |
| Solyc11g065120.1.1 | Tomato | cytosol | 31.22 | 10.89 |
| Solyc04g071040.2.1 | Tomato | cytosol | 26.4 | 9.24 |
| Solyc02g081250.1.1 | Tomato | cytosol | 28.43 | 5.37 |
| Solyc05g007280.2.1 | Tomato | cytosol | 0.25 | 1.69 |
Protein Annotations
| EnsemblPlants:Solyc05g006940.2.1 | EnsemblPlantsGene:Solyc05g006940.2 | Gene3D:2.130.10.30 | InterPro:IPR000408 | InterPro:IPR009091 | InterPro:RCC1/BLIP-II |
| InterPro:Reg_chr_condens | PFAM:PF00415 | PFscan:PS50012 | PRINTS:PR00633 | ScanProsite:PS00626 | SEG:seg |
| SUPFAM:SSF50985 | UniParc:UPI000276589E | UniProt:K4BWM0 | MapMan:35.1 | : | : |
Description
No Description!
Coordinates
chr5:-:1536690..1542139
Molecular Weight (calculated)
42682.1 Da
IEP (calculated)
6.374
GRAVY (calculated)
-0.303
Length
394 amino acids
Sequence
(BLAST)
(BLAST)
001: MEETERIKSR EEEEEEIWSW GAGTEGQLGT GELQDEHKPQ LIHSLSSFGP ISHISCGGAH VIALTPGGRV LTWGRGTSGQ LGHGEMVNCL HPKSVEYLEG
101: IFITHASAGW NHSGFVSDTG YVFTCGDGSF GQLGHEDYIS RCSPAQVLHF KARHVEQIAC GMRHSLVLLK GDTEDLIYGF GSGKRGQLGI SDDKLKSVST
201: PQVTLGFENV KIRSVTANGD HSAAISMNGH LYIWGRSFHG APDVYTPRRV TADLLFSQVA LGWNHALVLT GDGEVYMLGR YNYNVPTGAQ KANGMNHISE
301: DEGVLQRVLD FNSTKVVQIG AGAEHSAVVT DDGSVMTWGW GEHGQLGLGD TNDQTGPRAV SLRNEPSRKP CVGRVYCGSG FTFVIRTYTV KSSF
101: IFITHASAGW NHSGFVSDTG YVFTCGDGSF GQLGHEDYIS RCSPAQVLHF KARHVEQIAC GMRHSLVLLK GDTEDLIYGF GSGKRGQLGI SDDKLKSVST
201: PQVTLGFENV KIRSVTANGD HSAAISMNGH LYIWGRSFHG APDVYTPRRV TADLLFSQVA LGWNHALVLT GDGEVYMLGR YNYNVPTGAQ KANGMNHISE
301: DEGVLQRVLD FNSTKVVQIG AGAEHSAVVT DDGSVMTWGW GEHGQLGLGD TNDQTGPRAV SLRNEPSRKP CVGRVYCGSG FTFVIRTYTV KSSF
001: MAEHGETQAD EEEEEQVWSW GAGTDGQLGT TKLQDELLPQ LLSLTSLPSI SMLACGGAHV IALTSGGKVF TWGRGSSGQL GHGDILNITL PKLVSFFDDS
101: VITQAAAGWS HSGFVSDSGC IFTCGNGSFG QLGHGDTLSL STPAKVSHFN NDSVKMVACG MRHSLVLFAG NQVCGFGSGK RGQLGFSSDR IKSVNLPCVV
201: SGLKDVEVVR ISANGDHSAA ISADGQFFSW GRGFCGGPDV HAPQSLPSPL SFREVAVGWN HALLLTVDGE VFKLGSTLNK QPEKQQLQID SSEALFEKVP
301: DFDGVKVMQI AAGAEHSAAV TENGEVKTWG WGEHGQLGLG NTNDQTSPEL VSLGSIDLRT KEIKVYCGSG FTYAVKRKQE LSPTSS
101: VITQAAAGWS HSGFVSDSGC IFTCGNGSFG QLGHGDTLSL STPAKVSHFN NDSVKMVACG MRHSLVLFAG NQVCGFGSGK RGQLGFSSDR IKSVNLPCVV
201: SGLKDVEVVR ISANGDHSAA ISADGQFFSW GRGFCGGPDV HAPQSLPSPL SFREVAVGWN HALLLTVDGE VFKLGSTLNK QPEKQQLQID SSEALFEKVP
301: DFDGVKVMQI AAGAEHSAAV TENGEVKTWG WGEHGQLGLG NTNDQTSPEL VSLGSIDLRT KEIKVYCGSG FTYAVKRKQE LSPTSS
Arabidopsis Description
At1g27060 [Source:UniProtKB/TrEMBL;Acc:A2RVN2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.