Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400045467 | Potato | cytosol | 60.1 | 59.95 |
| Solyc05g006940.2.1 | Tomato | cytosol | 59.6 | 59.9 |
| CDY69131 | Canola | cytosol | 48.48 | 59.81 |
| CDY46423 | Canola | cytosol | 56.57 | 59.1 |
| CDY16215 | Canola | cytosol | 57.58 | 59.07 |
| Bra016304.1-P | Field mustard | cytosol | 54.29 | 58.27 |
| AT1G27060.1 | Thale cress | cytosol | 56.06 | 57.51 |
| Bra024664.1-P | Field mustard | cytosol | 52.02 | 57.38 |
| GSMUA_Achr6P29750_001 | Banana | cytosol | 56.31 | 56.17 |
| Os01t0777800-01 | Rice | cytosol | 51.52 | 50.87 |
| OQU87663 | Sorghum | cytosol | 50.0 | 49.01 |
| Zm00001d043280_P001 | Maize | cytosol | 50.25 | 48.77 |
| TraesCS3B01G347100.2 | Wheat | cytosol | 49.49 | 48.16 |
| TraesCS3D01G312300.1 | Wheat | cytosol | 49.49 | 48.16 |
| TraesCS3A01G319000.1 | Wheat | cytosol | 49.49 | 47.8 |
| KRH74759 | Soybean | nucleus | 61.87 | 43.52 |
| HORVU3Hr1G076310.2 | Barley | cytosol, mitochondrion, nucleus | 49.24 | 42.95 |
| KRH69375 | Soybean | nucleus | 62.12 | 41.62 |
| CDY14709 | Canola | nucleus | 58.08 | 33.29 |
| VIT_12s0057g00540.t01 | Wine grape | cytosol, mitochondrion | 13.38 | 28.49 |
| VIT_14s0006g03240.t01 | Wine grape | cytosol | 25.0 | 25.06 |
| VIT_07s0031g02850.t01 | Wine grape | mitochondrion | 25.51 | 24.05 |
| VIT_07s0031g02560.t01 | Wine grape | cytosol | 23.74 | 21.12 |
| VIT_14s0083g01020.t01 | Wine grape | cytosol | 23.23 | 19.25 |
| VIT_19s0014g03080.t01 | Wine grape | cytosol | 23.48 | 18.9 |
| VIT_03s0017g02290.t01 | Wine grape | endoplasmic reticulum, golgi | 15.4 | 18.54 |
| VIT_01s0137g00230.t01 | Wine grape | cytosol | 19.44 | 14.42 |
| VIT_01s0026g02170.t01 | Wine grape | cytosol | 32.32 | 14.1 |
| VIT_17s0000g05980.t01 | Wine grape | endoplasmic reticulum | 24.24 | 13.89 |
| VIT_05s0049g01140.t01 | Wine grape | cytosol | 32.07 | 11.97 |
| VIT_06s0009g03550.t01 | Wine grape | nucleus | 32.83 | 11.74 |
| VIT_13s0067g03380.t01 | Wine grape | endoplasmic reticulum, extracellular | 32.07 | 11.57 |
| VIT_18s0166g00210.t01 | Wine grape | cytosol | 30.56 | 10.72 |
| VIT_04s0079g00290.t01 | Wine grape | cytosol | 23.74 | 9.35 |
Protein Annotations
| EntrezGene:100246710 | wikigene:100246710 | Gene3D:2.130.10.30 | MapMan:35.1 | ProteinID:CCB56586 | ProteinID:CCB56586.1 |
| UniProt:F6HPF8 | EMBL:FN596002 | InterPro:IPR000408 | InterPro:IPR009091 | EntrezGene:LOC100246710 | wikigene:LOC100246710 |
| PFAM:PF00415 | PRINTS:PR00633 | ScanProsite:PS00626 | PFscan:PS50012 | InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens |
| SUPFAM:SSF50985 | UniParc:UPI0002108291 | ArrayExpress:VIT_01s0026g01520 | EnsemblPlantsGene:VIT_01s0026g01520 | EnsemblPlants:VIT_01s0026g01520.t01 | RefSeq:XP_002269566 |
| RefSeq:XP_002269566.1 | RefSeq:XP_010652533.1 | : | : | : | : |
Description
No Description!
Coordinates
chr1:-:10588255..10591733
Molecular Weight (calculated)
41967.7 Da
IEP (calculated)
6.585
GRAVY (calculated)
-0.171
Length
396 amino acids
Sequence
(BLAST)
(BLAST)
001: MEENERDKGG EVEIWSWGAG TDGQLGTTRL EDEHLPQLLD LPRFSSAGPI SLLACGGAHV LALTTDGKVV TWGRGTSGQL GHGDMVSSLQ PKHVKLLESF
101: VMTHVSAGWS HSGFVSDTGC LFTCGDGSFG QLGHGDCKSH CSPVKVSYFD SKHVDQIACG MRHSLVLLKG TGLSGDQVYG FGSGKRGQLG VSMDNTRSIS
201: VPQATVGLEG VEIISIDANG DHSAALSANG HLYTWGRGFG STSDVHCPRC LPSSLCFTQV ALGWNHMLVL TGGGEVFMLG GNRHGVLGDP QKGSQVKHLS
301: EESREENLEK VQGLDGLNVV QIAAGAEHSA LVTENRVIKT WGWGEHGQLG LGNTYDQISP QAVRLGHRLP GQHTMIKVYC GSGFTFAIKA VIPSQT
101: VMTHVSAGWS HSGFVSDTGC LFTCGDGSFG QLGHGDCKSH CSPVKVSYFD SKHVDQIACG MRHSLVLLKG TGLSGDQVYG FGSGKRGQLG VSMDNTRSIS
201: VPQATVGLEG VEIISIDANG DHSAALSANG HLYTWGRGFG STSDVHCPRC LPSSLCFTQV ALGWNHMLVL TGGGEVFMLG GNRHGVLGDP QKGSQVKHLS
301: EESREENLEK VQGLDGLNVV QIAAGAEHSA LVTENRVIKT WGWGEHGQLG LGNTYDQISP QAVRLGHRLP GQHTMIKVYC GSGFTFAIKA VIPSQT
001: MAEHGETQAD EEEEEQVWSW GAGTDGQLGT TKLQDELLPQ LLSLTSLPSI SMLACGGAHV IALTSGGKVF TWGRGSSGQL GHGDILNITL PKLVSFFDDS
101: VITQAAAGWS HSGFVSDSGC IFTCGNGSFG QLGHGDTLSL STPAKVSHFN NDSVKMVACG MRHSLVLFAG NQVCGFGSGK RGQLGFSSDR IKSVNLPCVV
201: SGLKDVEVVR ISANGDHSAA ISADGQFFSW GRGFCGGPDV HAPQSLPSPL SFREVAVGWN HALLLTVDGE VFKLGSTLNK QPEKQQLQID SSEALFEKVP
301: DFDGVKVMQI AAGAEHSAAV TENGEVKTWG WGEHGQLGLG NTNDQTSPEL VSLGSIDLRT KEIKVYCGSG FTYAVKRKQE LSPTSS
101: VITQAAAGWS HSGFVSDSGC IFTCGNGSFG QLGHGDTLSL STPAKVSHFN NDSVKMVACG MRHSLVLFAG NQVCGFGSGK RGQLGFSSDR IKSVNLPCVV
201: SGLKDVEVVR ISANGDHSAA ISADGQFFSW GRGFCGGPDV HAPQSLPSPL SFREVAVGWN HALLLTVDGE VFKLGSTLNK QPEKQQLQID SSEALFEKVP
301: DFDGVKVMQI AAGAEHSAAV TENGEVKTWG WGEHGQLGLG NTNDQTSPEL VSLGSIDLRT KEIKVYCGSG FTYAVKRKQE LSPTSS
Arabidopsis Description
At1g27060 [Source:UniProtKB/TrEMBL;Acc:A2RVN2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.