Factsheet for VIT_13s0067g03380.t01

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, extracellular

Predictor Summary:

extracellular 6
endoplasmic reticulum 6
vacuole 5
plasma membrane 5
golgi 5
nucleus 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum, extracellular
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	secretory
MultiLoc:	extracellular
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0009g03550.t01	Wine grape	nucleus	80.33	79.67
HORVU0Hr1G028990.2	Barley	cytosol	27.05	75.38
GSMUA_Achr5P08220_001	Banana	cytosol	74.04	73.91
GSMUA_Achr8P00080_001	Banana	endoplasmic reticulum	62.84	73.8
KXG34127	Sorghum	cytosol	61.93	73.75
Zm00001d042074_P001	Maize	cytosol	72.4	72.87
Os05t0384800-01	Rice	cytosol	71.31	72.1
TraesCS1A01G240600.2	Wheat	cytosol	71.86	71.92
TraesCS1D01G240700.1	Wheat	cytosol	71.4	71.73
TraesCS1B01G252700.2	Wheat	cytosol	71.31	71.51
TraesCS3B01G543500.1	Wheat	cytosol	70.4	70.98
Zm00001d011851_P001	Maize	cytosol	72.22	70.93
TraesCS3D01G489600.1	Wheat	cytosol	70.13	70.71
HORVU3Hr1G107820.4	Barley	endoplasmic reticulum	70.67	70.61
HORVU1Hr1G056870.2	Barley	cytosol, endoplasmic reticulum, nucleus	71.77	70.04
Os01t0952300-00	Rice	cytosol	70.4	67.63
VIT_12s0057g00540.t01	Wine grape	cytosol, mitochondrion	11.38	67.2
VIT_01s0026g02170.t01	Wine grape	cytosol	52.82	63.88
VIT_17s0000g05980.t01	Wine grape	endoplasmic reticulum	35.88	57.02
VIT_18s0166g00210.t01	Wine grape	cytosol	51.82	50.4
VIT_05s0049g01140.t01	Wine grape	cytosol	45.63	47.22
VIT_04s0079g00290.t01	Wine grape	cytosol	37.61	41.09
VIT_07s0031g02560.t01	Wine grape	cytosol	14.39	35.51
VIT_01s0026g01520.t01	Wine grape	cytosol	11.57	32.07
VIT_07s0031g02850.t01	Wine grape	mitochondrion	11.84	30.95
VIT_14s0006g03240.t01	Wine grape	cytosol	10.02	27.85
VIT_19s0014g03080.t01	Wine grape	cytosol	12.02	26.83
VIT_03s0017g02290.t01	Wine grape	endoplasmic reticulum, golgi	7.74	25.84
VIT_14s0083g01020.t01	Wine grape	cytosol	11.02	25.31
VIT_01s0137g00230.t01	Wine grape	cytosol	12.3	25.28

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	InterPro:BRX_N	InterPro:Brevis_radix_dom
ProteinID:CCB62286	ProteinID:CCB62286.1	ncoils:Coil	UniProt:F6I5R8	EMBL:FN596752	GO:GO:0003674
GO:GO:0005488	GO:GO:0046872	InterPro:IPR000408	InterPro:IPR001849	InterPro:IPR009091	InterPro:IPR011993
InterPro:IPR013083	InterPro:IPR013591	InterPro:IPR017455	PFAM:PF00415	PFAM:PF01363	PFAM:PF08381
PFAM:PF13713	PFAM:PF16457	PFAM:PF16627	InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00633
ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF301
InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903
TIGR:TC68382	UniParc:UPI0002108C0D	ArrayExpress:VIT_13s0067g03380	EnsemblPlantsGene:VIT_13s0067g03380	EnsemblPlants:VIT_13s0067g03380.t01	InterPro:Znf_FYVE
InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

No Description!

Coordinates

chr13_random:-:1858556..1886223

Molecular Weight (calculated)

118547.0 Da

IEP (calculated)

9.295

GRAVY (calculated)

-0.366

Length

1098 amino acids

Sequence
(BLAST)

0001: MVFAWFRSSI FILLVKVLAI IALKKGAHLL KYGRRGKPKF CPFRLSNDES VLIWLSGKEE KRLKLSHVSR IIPGQRTPIF QRYPRPEKEY QSFSLIYNDR
0101: SLDLICKDKD EAEVWLTGLK ALISRGHHQK GRTESRSGVS SEANSPRTHT QRSSPLSSPF GSGDSMQKDG VDPLRLHTPY ESPPKIGLEK ALSDVILYAV
0201: PPKAFFPSES GCNSVHSLSS GGSDGINGRL KGMGVDAFRV SLSSAVSSSS QGSGHDDGDA LGDVFIWGEG TGDGTLGGGV LRVGSSSSVK MDSFVPKPLE
0301: SAVLLDVQNI ACGGRHAALV TKQGEVFSWG EESGGRLGHG VDSDVSHPKL IDALKNMNIE LVACGEYHSC AVTLSGDLYT WGGGSYNFGL LGRGNDMSHW
0401: VPKRLIGPSE GIHVSSISCG PWHTAVVTSA GQLFTFGDGT FGVLGHGDCR SVPIPREVES LKGLRTVRAA CGVWHTAAVV EVMVGSSSSS NCSSGKVFTW
0501: GDGDKGRLGH GDKEARLVPT CVAALVEPNF CQVACGHSLT VALTTTGHVY TMGSPVYGQL GDPQADGKLP TRIEGKLLKN FVEEIDCGAY HVAVLTSRTE
0601: VYTWGKGANG RLGHGDTDDR NTPSLVEALK DKQVKSIVCG ANFTAAICLH KWISGVDQSM CSGCRLPFNF KRKRHNCYNC GLVFCHSCSS KKSLKTSMAP
0701: NPNKPYRVCD NCFSKLRKAT ETDSSSHSSL SRRGSMNQGL NELAEKDEKL DSRSHVQLGK YSSMQSFKQV ESGTSRRNKK LEFNSSRVSP LPNGASQWSA
0801: TNNSKSFNPA FPPSKKFISA SVPGSRIASR ATSPTSRQSS PPRPATPTPI LAGLTSSKIV VDAKSTNDNL SQEVLKLRAQ VENLTRKAQL QDVELERTAK
0901: QLKDAIAVAG EESAKCKAAK EVIKSLTAQL KDMAERLPVG AVRNSKSPPF SSISPTPLSD VSTVATEQIC GPITFHESDS MGSNCVVISN GSSTSSNHSS
1001: YARVGHSEAI IRNKNKTDAE PYQGVEWVEQ DEPGVYITLV SLPGGVKDLK RVRFSRKRFS EKQAEQWWAA NRVRVYQQYN VPLVDKSCIG IGREGLAH

Best Arabidopsis Sequence Match ( AT5G19420.2 )
(BLAST)

0001: MWSGFRDCTR NGRMTPSDLS RAGPVTRDIE QLKIELYSTF GVSKLDSSYI LENKNALHAI TALKKGAYLL KYGRRGKPKF CPFRLSNDES VLIWFSGKEE
0101: KHLKLSHVSR IISGQRTPIF QRYPRPEKEY QSFSLIYDER SLDLICKDKD EAEVWFSGLK ALISRCHQRK WRTESRSDGT PSEANSPRTY TRRSSPLHSP
0201: FSSNESFQKE GSNHLRLHSP YESPPKNGVD KAFSDMSLYA VPPKGFFPPG SATMSVHSLS SGGSDTLHGH MKGMGMDAFR VSLSSAISSS SHGSGHDDGD
0301: TLGDVFMWGE GIGEGVLGGG NHRVGSSLEI KMDSLLPKAL ESTIVLDVQN IACGGQHAVL VTKQGESFSW GEESEGRLGH GVDSNVQHPK LIDALNTTNI
0401: ELVACGEYHS CAVTLSGDLY TWGKGDFGIL GHGNEVSHWV PKRVNFLMEG IHVSSIACGP YHTAVVTSAG QLFTFGDGTF GVLGHGDRKS VFIPREVDSL
0501: KGLRTVRAAC GVWHTAAVVE VMVGSSSSSN CSSGKLFTWG DGDKSRLGHG DKEPKLVPTC VAALVEPNFC QVACGHSLTV ALTTSGHVYT MGSPVYGQLG
0601: NPHADGKVPT RVDGKLHKSF VEEIACGAYH VAVLTSRTEV YTWGKGSNGR LGHGDADDRN SPTLVESLKD KQVKSIACGS NFTAAVCLHK WASGMDQSMC
0701: SGCRQPFNFK RKRHNCYNCG LVFCHSCSNK KSLKACMAPN PNKPYRVCDR CFNKLKKAME TDPSSHSSLS RRESVNQGSD AIDRDEKLDT RSDGQLARFS
0801: LLEPMRQVDS RSKKNKKYEF NSSRVSPIPS GGSHRGSLNI TKSFNPTFGS SKKFFSASVP GSRIASRATS PISRRPSPPR STTPTPTLSG LTTPKIVVDD
0901: TKRSNDNLSQ EVVMLRSQVE NLTRKAQLQE VELERTTKQL KEALAIASEE SARCKAAKEV IKSLTAQLKD MAERLPVGSA RTVKSPSLNS FGSSPDYAAP
1001: SSNTLNRPNS RETDSDSLTT VPMFSNGTST PVFDSGSYRQ QANHAAEAIN RISTRSKESE PRNENEWVEQ DEPGVYITLT ALAGGARDLK RVRFSRKRFS
1101: EKQAEEWWAE NRGRVYEQYN VRIVVDKSSV GVGSEDLGH

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4K148]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.