Factsheet for VIT_06s0009g03550.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH73555	Soybean	nucleus	87.26	87.18
KRH14571	Soybean	nucleus	86.99	86.99
KRG99075	Soybean	nucleus	85.37	85.44
KRH45937	Soybean	nucleus	85.37	85.21
Solyc11g065120.1.1	Tomato	cytosol	85.46	83.79
Solyc12g099740.1.1	Tomato	nucleus	77.33	83.51
VIT_13s0067g03380.t01	Wine grape	endoplasmic reticulum, extracellular	79.67	80.33
AT5G12350.1	Thale cress	nucleus	77.96	80.28
CDX97187	Canola	nucleus	75.7	79.21
Bra006504.1-P	Field mustard	cytosol	78.86	79.15
Bra008895.1-P	Field mustard	nucleus	75.79	78.85
CDX69686	Canola	nucleus	76.15	78.78
CDX85690	Canola	nucleus	76.06	78.69
CDX91165	Canola	nucleus	76.15	78.56
AT5G19420.2	Thale cress	mitochondrion	80.04	77.79
GSMUA_Achr5P08220_001	Banana	cytosol	77.24	77.73
CDX88891	Canola	cytosol, mitochondrion, nucleus	79.04	77.09
CDX70876	Canola	cytosol	77.42	76.86
CDY13998	Canola	nucleus	77.42	76.79
CDX92532	Canola	nucleus	77.24	76.75
Zm00001d042074_P001	Maize	cytosol	75.07	76.17
Bra023374.1-P	Field mustard	nucleus	76.33	75.99
KXG34127	Sorghum	cytosol	63.14	75.81
HORVU0Hr1G028990.2	Barley	cytosol	26.92	75.63
GSMUA_Achr8P00080_001	Banana	endoplasmic reticulum	63.78	75.51
Os05t0384800-01	Rice	cytosol	73.89	75.32
Bra002235.1-P	Field mustard	nucleus	75.52	75.04
TraesCS1D01G240700.1	Wheat	cytosol	73.98	74.93
TraesCS1B01G252700.2	Wheat	cytosol	74.07	74.89
TraesCS1A01G240600.2	Wheat	cytosol	74.07	74.75
Zm00001d011851_P001	Maize	cytosol	74.71	73.97
TraesCS3B01G543500.1	Wheat	cytosol	72.0	73.19
TraesCS3D01G489600.1	Wheat	cytosol	71.82	73.0
HORVU1Hr1G056870.2	Barley	cytosol, endoplasmic reticulum, nucleus	73.89	72.71
HORVU3Hr1G107820.4	Barley	endoplasmic reticulum	71.45	71.97
Os01t0952300-00	Rice	cytosol	72.81	70.52
VIT_12s0057g00540.t01	Wine grape	cytosol, mitochondrion	11.29	67.2
VIT_01s0026g02170.t01	Wine grape	cytosol	53.66	65.42
VIT_17s0000g05980.t01	Wine grape	endoplasmic reticulum	36.59	58.61
VIT_18s0166g00210.t01	Wine grape	cytosol	53.84	52.79
VIT_05s0049g01140.t01	Wine grape	cytosol	47.61	49.67
VIT_04s0079g00290.t01	Wine grape	cytosol	38.12	41.99
VIT_07s0031g02560.t01	Wine grape	cytosol	14.09	35.06
VIT_01s0026g01520.t01	Wine grape	cytosol	11.74	32.83
VIT_07s0031g02850.t01	Wine grape	mitochondrion	11.74	30.95
VIT_14s0006g03240.t01	Wine grape	cytosol	10.3	28.86
VIT_03s0017g02290.t01	Wine grape	endoplasmic reticulum, golgi	8.31	27.96
VIT_19s0014g03080.t01	Wine grape	cytosol	12.29	27.64
VIT_14s0083g01020.t01	Wine grape	cytosol	11.29	26.15
VIT_01s0137g00230.t01	Wine grape	cytosol	12.56	26.03

Protein Annotations

EntrezGene:100248282	wikigene:100248282	Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1
InterPro:BRX_N	InterPro:Brevis_radix_dom	ProteinID:CCB49039	ProteinID:CCB49039.1	ncoils:Coil	UniProt:F6HA19
EMBL:FN595504	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000408	InterPro:IPR001849
InterPro:IPR009091	InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR013591	InterPro:IPR017455	EntrezGene:LOC100248282
wikigene:LOC100248282	PFAM:PF00415	PFAM:PF01363	PFAM:PF08381	PFAM:PF13713	PFAM:PF16457
PFAM:PF16627	InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012
PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF301	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens
SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903	TIGR:TC64912	UniParc:UPI00021095A4
ArrayExpress:VIT_06s0009g03550	EnsemblPlantsGene:VIT_06s0009g03550	EnsemblPlants:VIT_06s0009g03550.t01	unigene:Vvi.14536	RefSeq:XP_002279847	RefSeq:XP_002279847.2
InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

No Description!

Coordinates

chr6:+:16829603..16854500

Molecular Weight (calculated)

120073.0 Da

IEP (calculated)

9.338

GRAVY (calculated)

-0.502

Length

1107 amino acids

Sequence
(BLAST)

0001: MSRTDRMASD LSRTGAAERD TEQALTALKK GAYLLKYGRR GKPKFCPFRL SNDESVLIWF SGKEEKLLKL SHVSRIISGQ RTPIFQRYPR PEKEYQSFSL
0101: IYNDRSLDLI CKDKDEAEVW FSGLKALISR GGHHRKWRTE SRSDGIPSEA NSPRTYTRRS SPLNSPFGSA DSLQKDGGDH LRLHSPYESP PKSVMEKAFS
0201: DVILYAVPPK GFFPSDSASG SVHSLSSGGS DSVHGHMKAM TMDAFRVSLS SAVSSSSQGS GHDDGDALGD VFIWGEGTGD GVLGGGSHRV GSCFGMKMDS
0301: LLPKALESAV VLDVQNIACG GRHAALVTKQ GEIFSWGEES GGRLGHGVDS DVLHPKLIDS LSNTNIELVA CGEYHTCAVT LSGDLYTWGD GTYNFGLLGH
0401: GNEVSHWVPK RVNGPLEGIH VSSISCGPWH TAVVTSSGQL FTFGDGTFGV LGHGDTKSVS KPREVESLKG HRTVISACGV WHTAAVVEIM VGNPSSSNCS
0501: SGKLFTWGDG DKGRLGHGDK EAKLVPTCVA ALVDPNFCRV ACGHSLTVAL TTSGHVYTMG SPVYGQLGNP QADGKLPTRV EGKLAKSFVE EIACGAYHVA
0601: VLTSRTEVYT WGKGANGRLG HGDTDDRNSP TLVEALKDKQ VKSIACGTNF TATICLHKWV SGVDQSMCSG CRLPFNFKRK RHNCYNCGLV FCHSCSSKKS
0701: LKASMAPNPN KPYRVCDNCF SKLRKAIETD ASSQSAVSRR GVTNQGLNEL IDKDEKLDSR SRVQLARFSS MESLKQAESR TSKRNKKLEF NSSRVSPIPN
0801: GGSQWGGALK SLNPVFGSSK KFFSASVPGS RIVSRTTSPI SRRPSPPRAA TPTPTLEGLT SPKIVVDDAK RTNDSLSQEV IKLRVQVENL TRKAQLQEVE
0901: LERTTKQLKE AIAIAGEETA RCKAAKEVIK SLTAQLKDMA ERLPVGAARN TKSPSFTSLG SNPASSDLSS LSIDRINGQI TSQEPDLNGS NGQLLSNGSS
1001: TTNNRSSGHN RLGHLEATIR NGSRTKESEH RNDNEWVEQD EPGVYITLTS LPGGVKDLKR VRFSRKRFSE KQAEQWWAEN RARVHERYNV RMIDKSSVGV
1101: GSEDLAH

Best Arabidopsis Sequence Match ( AT5G19420.1 )
(BLAST)

0001: MSRNGRMTPS DLSRAGPVTR DIEQAITALK KGAYLLKYGR RGKPKFCPFR LSNDESVLIW FSGKEEKHLK LSHVSRIISG QRTPIFQRYP RPEKEYQSFS
0101: LIYDERSLDL ICKDKDEAEV WFSGLKALIS RCHQRKWRTE SRSDGTPSEA NSPRTYTRRS SPLHSPFSSN ESFQKEGSNH LRLHSPYESP PKNGVDKAFS
0201: DMSLYAVPPK GFFPPGSATM SVHSLSSGGS DTLHGHMKGM GMDAFRVSLS SAISSSSHGS GHDDGDTLGD VFMWGEGIGE GVLGGGNHRV GSSLEIKMDS
0301: LLPKALESTI VLDVQNIACG GQHAVLVTKQ GESFSWGEES EGRLGHGVDS NVQHPKLIDA LNTTNIELVA CGEYHSCAVT LSGDLYTWGK GDFGILGHGN
0401: EVSHWVPKRV NFLMEGIHVS SIACGPYHTA VVTSAGQLFT FGDGTFGVLG HGDRKSVFIP REVDSLKGLR TVRAACGVWH TAAVVEVMVG SSSSSNCSSG
0501: KLFTWGDGDK SRLGHGDKEP KLVPTCVAAL VEPNFCQVAC GHSLTVALTT SGHVYTMGSP VYGQLGNPHA DGKVPTRVDG KLHKSFVEEI ACGAYHVAVL
0601: TSRTEVYTWG KGSNGRLGHG DADDRNSPTL VESLKDKQVK SIACGSNFTA AVCLHKWASG MDQSMCSGCR QPFNFKRKRH NCYNCGLVFC HSCSNKKSLK
0701: ACMAPNPNKP YRVCDRCFNK LKKAMETDPS SHSSLSRRES VNQGSDAIDR DEKLDTRSDG QLARFSLLEP MRQVDSRSKK NKKYEFNSSR VSPIPSGGSH
0801: RGSLNITKSF NPTFGSSKKF FSASVPGSRI ASRATSPISR RPSPPRSTTP TPTLSGLTTP KIVVDDTKRS NDNLSQEVVM LRSQVENLTR KAQLQEVELE
0901: RTTKQLKEAL AIASEESARC KAAKEVIKSL TAQLKDMAER LPVGSARTVK SPSLNSFGSS PDYAAPSSNT LNRPNSRETD SDSLTTVPMF SNGTSTPVFD
1001: SGSYRQQANH AAEAINRIST RSKESEPRNE NEWVEQDEPG VYITLTALAG GARDLKRVRF SRKRFSEKQA EEWWAENRGR VYEQYNVRIV VDKSSVGVGS
1101: EDLGH

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4K148]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.