Factsheet for Bra023374.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85690	Canola	nucleus	95.5	99.25
AT5G12350.1	Thale cress	nucleus	90.92	94.05
Bra008895.1-P	Field mustard	nucleus	89.93	93.98
Bra006504.1-P	Field mustard	cytosol	83.27	83.95
Bra002235.1-P	Field mustard	nucleus	79.95	79.8
KRH14571	Soybean	nucleus	76.98	77.33
KRH73555	Soybean	nucleus	76.62	76.9
VIT_06s0009g03550.t01	Wine grape	nucleus	75.99	76.33
KRG99075	Soybean	nucleus	75.63	76.04
KRH45937	Soybean	nucleus	74.73	74.93
Solyc11g065120.1.1	Tomato	cytosol	75.9	74.76
Solyc12g099740.1.1	Tomato	nucleus	67.72	73.46
HORVU0Hr1G028990.2	Barley	cytosol	25.72	72.59
Zm00001d042074_P001	Maize	cytosol	69.87	71.22
GSMUA_Achr5P08220_001	Banana	cytosol	70.23	71.0
TraesCS1D01G240700.1	Wheat	cytosol	69.6	70.81
TraesCS1B01G252700.2	Wheat	cytosol	69.6	70.68
TraesCS1A01G240600.2	Wheat	cytosol	69.69	70.65
Os05t0384800-01	Rice	cytosol	68.53	70.17
KXG34127	Sorghum	cytosol	57.91	69.85
Zm00001d011851_P001	Maize	cytosol	69.87	69.5
GSMUA_Achr8P00080_001	Banana	endoplasmic reticulum	58.36	69.41
HORVU1Hr1G056870.2	Barley	cytosol, endoplasmic reticulum, nucleus	69.78	68.98
TraesCS3B01G543500.1	Wheat	cytosol	67.45	68.87
TraesCS3D01G489600.1	Wheat	cytosol	67.27	68.69
HORVU3Hr1G107820.4	Barley	endoplasmic reticulum	66.46	67.24
Os01t0952300-00	Rice	cytosol	68.35	66.49
Bra016214.1-P	Field mustard	cytosol	47.75	50.57
Bra003698.1-P	Field mustard	mitochondrion	47.66	49.21
Bra015708.1-P	Field mustard	cytosol	47.12	48.79
Bra019511.1-P	Field mustard	cytosol	38.31	44.51
Bra007876.1-P	Field mustard	cytosol, nucleus, plasma membrane	45.59	43.78
Bra023740.1-P	Field mustard	cytosol	41.73	43.53
Bra038181.1-P	Field mustard	cytosol	34.44	38.22
Bra029198.1-P	Field mustard	cytosol	13.49	36.41
Bra024242.1-P	Field mustard	cytosol	13.13	35.52
Bra037755.1-P	Field mustard	cytosol	13.22	35.34
Bra014931.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	40.11	35.12
Bra016304.1-P	Field mustard	cytosol	11.51	34.69
Bra024664.1-P	Field mustard	cytosol	10.16	31.48
Bra028647.1-P	Field mustard	mitochondrion	12.05	30.66
Bra021435.1-P	Field mustard	cytosol	10.34	29.34
Bra013002.1-P	Field mustard	mitochondrion	11.24	28.22
Bra008654.1-P	Field mustard	cytosol	9.8	27.46
Bra039169.1-P	Field mustard	cytosol	11.33	26.75
Bra027244.1-P	Field mustard	cytosol	11.33	25.71
Bra004253.1-P	Field mustard	plastid	11.51	24.71
Bra017335.1-P	Field mustard	cytosol	11.6	24.29
Bra025182.1-P	Field mustard	cytosol	11.51	24.2
Bra004074.1-P	Field mustard	cytosol, plastid	11.24	24.08
Bra036349.1-P	Field mustard	cytosol, plastid	10.88	22.04
Bra021109.1-P	Field mustard	endoplasmic reticulum, extracellular	11.42	15.45

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	InterPro:BRX_N	EnsemblPlantsGene:Bra023374
EnsemblPlants:Bra023374.1	EnsemblPlants:Bra023374.1-P	InterPro:Brevis_radix_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR000408	InterPro:IPR001849	InterPro:IPR009091	InterPro:IPR011993	InterPro:IPR013083
InterPro:IPR013591	InterPro:IPR017455	UniProt:M4E3M1	PFAM:PF00415	PFAM:PF01363	PFAM:PF08381
PFAM:PF13713	PFAM:PF16457	InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00633	ScanProsite:PS00626
PFscan:PS50012	PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF301	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI0002543409
InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

AT5G12350 (E=0.0) | Ran GTPase binding / chromatin binding / zinc ion binding

Coordinates

chrA02:+:3067383..3071743

Molecular Weight (calculated)

121839.0 Da

IEP (calculated)

8.959

GRAVY (calculated)

-0.465

Length

1112 amino acids

Sequence
(BLAST)

0001: MSRNGRMASD LSRAVPVERD IEQVVCFIAF SHFDSCYVAL RLETSVCCCC LGESSIAYEA IIALKKGAYL LKYGRRGKPK FCPFRLSNDE TVLIWFSGKE
0101: EKHLKLSHVS RIISGQRTPI FQRYPRPEKE YQSFSLIYSE RSLDVICKDK DEAEVWFSGL KALISHFRQR TRRTESRSDG TPSEANSPRT YTRRSSPLHS
0201: PFSSNDSLQK DGSDHLRIHS PFESPPKLDK ALSDMALYAV PPKRFYPSDS GTISVHSGGS DSMHGHMRGT GMDAFRVSMS SAVSSSSHGS GHDEGDALGD
0301: VFIWGEGIGE GVLGGGNRRV GSSFDIKMDS LLPKALESTI VLDVQNIACG GQHAVLATKQ GECFSWGEES EGRLGHGVDS NIQNPKLIDA LNTTNIELVA
0401: CGEFHSCAVT LSGDLYTWGK GDFGVLGHGN EVSHWVPKRV NFLLEGIHVS SIACGPYHTA VVTSAGQLFT FGDGTFGVLG HGDRKSVFTP REVDSLKGLR
0501: TVRAACGVWH TAAVVEVMVG SSSSSNCSSG KLFTWGDGDK CRLGHGNKEP KLVPTCVAAL VEPNFCQVAC GHSLTVALTT SGEVYTMGSP VYGQLGNSYA
0601: DGKVPNRVEG KLHKSFVEEI ACGAYHVAVL TAKTEVYTWG KGSNGRLGHG DVDDRNSPTL VESLKDKQVK SIACGTNFTA AVCIHRWASG MDQSMCSGCR
0701: QPFNFKRKRH NCYNCGLVFC HSCTNKKSLK ACMAPNPNKP YRVCDKCFNK LKKTMETDSS SHSSLSRRGS INQGSDTIYK DDKLDSRSDG QLARFSLMDS
0801: MKQVDNRHKK NKKYEFNSSR VSPIPSRSSQ RGALNIVKTF NPVFGASKKF FSASVPGSRI VSRATSPVSR RPSPPRSTTP TPTLSGLTTP RIVVDDTKRT
0901: SDNLSQEVVK LRSQVESLTR KAQFQEVELE RTAKQLKEAL AIASEETTRC KAAKEVIKSL TAQLKDMAER LPVGSAPARA IKSPSSLNSF GSSPGRIDPF
1001: NILNRPNSQE STEPDGVNTP IFSNGTITPV FGNGEATNEA QNEKEWVEQD EPGVYITLTA LAGGARDLKR VRFSRKKFSE KQAEQWWADK RGRVYEQYNV
1101: RIVDKASEEM PR

Best Arabidopsis Sequence Match ( AT5G12350.1 )
(BLAST)

0001: MSRNGRMASD LSRAGPVERD IEQAIIALKK GAYLLKYGRR GKPKFCPFRL SNDETVLIWF SGNEEKHLKL SHVSRIISGQ RTPIFQRYPR PEKEYQSFSL
0101: IYSERSLDVI CKDKDEAEVW FTGLKALISH CHQRNRRTES RSDGTPSEAN SPRTYTRRSS PLHSPFSSND SLQKDGSNHL RIHSPFESPP KNGLDKAFSD
0201: MALYAVPPKG FYPSDSATIS VHSGGSDSMH GHMRGMGMDA FRVSMSSAVS SSSHGSGHDD GDALGDVFIW GEGIGEGVLG GGNRRVGSSF DIKMDSLLPK
0301: ALESTIVLDV QNIACGGQHA VLVTKQGESF SWGEESEGRL GHGVDSNIQQ PKLIDALNTT NIELVACGEF HSCAVTLSGD LYTWGKGDFG VLGHGNEVSH
0401: WVPKRVNFLL EGIHVSSIAC GPYHTAVVTS AGQLFTFGDG TFGVLGHGDK KSVFIPREVD SLKGLRTVRA ACGVWHTAAV VEVMVGSSSS SNCSSGKLFT
0501: WGDGDKGRLG HGNKEPKLVP TCVAALVEPN FCQVACGHSL TVALTTSGHV YTMGSPVYGQ LGNSHADGKT PNRVEGKLHK SFVEEIACGA YHVAVLTSRT
0601: EVYTWGKGSN GRLGHGDVDD RNSPTLVESL KDKQVKSIAC GTNFTAAVCI HRWASGMDQS MCSGCRQPFS FKRKRHNCYN CGLVFCHSCT SKKSLKACMA
0701: PNPNKPYRVC DKCFNKLKKT METDPSSHSS LSRRGSINQG SDPIDKDDKF DSRSDGQLAR FSLMESMRQV DSRHKKNKKY EFNSSRVSPI PSGSSQRGAL
0801: NIAKSFNPVF GASKKFFSAS VPGSRIVSRA TSPISRRPSP PRSTTPTPTL SGLATPKFVV DDTKRTNDNL SQEVVKLRSQ VESLTRKAQL QEVELERTTK
0901: QLKEALAITN EETTRCKAAK EVIKSLTAQL KDMAERLPVG SARTVKSPPS LNSFGSSPGR IDPFNILNQA NSQESEPNGI TTPMFSNGTM TPAFGNGEAT
1001: NEARNEKEWV EQDEPGVYIT LTALAGGARD LKRVRFSRKR FSEIQAEQWW ADNRGRVYEQ YNVRMVDKAS EDLPR

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4K0X5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.