Factsheet for Bra008654.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX69479	Canola	cytosol	99.5	99.5
CDY26488	Canola	cytosol	99.24	99.0
AT5G16040.1	Thale cress	cytosol	93.45	93.69
Bra021435.1-P	Field mustard	cytosol	86.9	88.01
KRG93861	Soybean	nucleus	81.86	82.28
PGSC0003DMT400032945	Potato	extracellular	79.6	80.82
Solyc02g085780.2.1	Tomato	cytosol	79.35	80.77
VIT_14s0006g03240.t01	Wine grape	cytosol	79.35	79.75
Zm00001d050380_P004	Maize	cytosol	77.58	79.18
GSMUA_Achr9P15560_001	Banana	cytosol	74.06	79.03
KXG25196	Sorghum	cytosol	77.58	78.77
TraesCS7D01G282600.1	Wheat	cytosol	73.3	77.19
TraesCS7B01G200200.1	Wheat	cytosol	74.31	75.84
TraesCS7A01G284800.1	Wheat	cytosol	74.56	74.19
Zm00001d032229_P002	Maize	mitochondrion	77.08	73.03
HORVU7Hr1G062090.6	Barley	cytosol	74.06	71.01
Bra016304.1-P	Field mustard	cytosol	24.69	26.56
Bra024664.1-P	Field mustard	cytosol	22.42	24.79
Bra024242.1-P	Field mustard	cytosol	24.18	23.36
Bra028647.1-P	Field mustard	mitochondrion	25.19	22.88
Bra037755.1-P	Field mustard	cytosol	23.93	22.84
Bra029198.1-P	Field mustard	cytosol	23.17	22.33
Bra013002.1-P	Field mustard	mitochondrion	24.69	22.12
Bra039169.1-P	Field mustard	cytosol	23.93	20.17
Bra017335.1-P	Field mustard	cytosol	26.2	19.59
Bra025182.1-P	Field mustard	cytosol	25.44	19.09
Bra027244.1-P	Field mustard	cytosol	23.17	18.78
Bra004074.1-P	Field mustard	cytosol, plastid	24.43	18.69
Bra036349.1-P	Field mustard	cytosol, plastid	25.69	18.58
Bra004253.1-P	Field mustard	plastid	24.18	18.53
Bra021109.1-P	Field mustard	endoplasmic reticulum, extracellular	22.42	10.83
Bra003698.1-P	Field mustard	mitochondrion	28.72	10.59
Bra019511.1-P	Field mustard	cytosol	24.94	10.34
Bra015708.1-P	Field mustard	cytosol	27.96	10.34
Bra023740.1-P	Field mustard	cytosol	27.71	10.32
Bra016214.1-P	Field mustard	cytosol	27.2	10.29
Bra008895.1-P	Field mustard	nucleus	26.7	9.96
Bra006504.1-P	Field mustard	cytosol	27.46	9.88
Bra023374.1-P	Field mustard	nucleus	27.46	9.8
Bra002235.1-P	Field mustard	nucleus	27.2	9.69
Bra038181.1-P	Field mustard	cytosol	22.92	9.08
Bra007876.1-P	Field mustard	cytosol, nucleus, plasma membrane	26.2	8.98
Bra014931.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	27.46	8.58
Os02t0684900-01	Rice	cytosol	0.5	0.46
Os09t0560500-01	Rice	mitochondrion, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:Bra008654.1	EnsemblPlants:Bra008654.1-P	EnsemblPlantsGene:Bra008654	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091
InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF206	PFAM:PF00415	PFscan:PS50012
PRINTS:PR00633	ScanProsite:PS00626	SEG:seg	SUPFAM:SSF50985	UniParc:UPI0002544C2D	UniProt:M4CWQ7
MapMan:35.1	:	:	:	:	:

Description

AT5G16040 (E=6e-216) | regulator of chromosome condensation (RCC1) family protein

Coordinates

chrA10:+:13249239..13251787

Molecular Weight (calculated)

42889.3 Da

IEP (calculated)

5.173

GRAVY (calculated)

-0.426

Length

397 amino acids

Sequence
(BLAST)

001: MASATSVIAW GSGEDGQLGL GTYEEKEWAC VVEALDPFAV RSVVGGSRNS LAICDDGKLF TWGWNQRGTL GHPPEKKTES VPSLVKSLAN VKITQAAIGG
101: WHCLAVDDQG RAYAWGGNEY GQCGEEPSKD DSGRPVRRDI VIPKRCAPKL TVRQVAAGGT HSVVLTREGS VWTWGQPWPP GDIKQISVPV RVQGLENVRL
201: IAVGAFHNLA LKEDGTLWAW GNNEYGQLGT GDTQPRSHPI PVQGLDDLTL VDIAAGGWHS TALTEEGEVY AWGRGEHGRL GFGDNDKSSK MVPQKVNLLA
301: GEDIIQVSCG GTHSVALTRD GRIFSFGRGD HGRLGYGRKV TTGQPLELPI DIPPPEGQFN HADEEEDGKW IAKFVACGGR HTLAIMEWKA DQEEETE

Best Arabidopsis Sequence Match ( AT5G16040.1 )
(BLAST)

001: MASATSVIAW GSGEDGQLGL GTDEEKELAS VVDALEPFNV RSVVGGSRNS LAICDDGKLF TWGWNQRGTL GHPPETKTES TPSLVKSLAN VKIVQAAIGG
101: WHCLAVDDQG RAYAWGGNEY GQCGEEPSKD ETGRPVRRDI VIPKRCAQQL TVRQVAAGGT HSVVLTREGY VWTWGQPWPP GDIKQISVPV RVQGLENVRL
201: IAVGAFHNLA LKEDGTLWAW GNNEYGQLGT GDTQPRSYPI PVQGLDDLTL VDIAAGGWHS TALTNEGEVY GWGRGEHGRL GFGDNDKSSK MLPQKVNLLA
301: GEDIIQVSCG GTHSVALTRD GRIFSFGRGD HGRLGYGRKV TTGQPLELPI HIPPPEGRFN HTDEEDDGKW IAKHVACGGR HTLAIVEWKY DQEETE

Arabidopsis Description

At5g16040 [Source:UniProtKB/TrEMBL;Acc:Q9LFS0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.