Factsheet for Zm00001d032229_P002

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050380_P004	Maize	cytosol	85.44	92.03
KXG25196	Sorghum	cytosol	85.68	91.82
TraesCS7B01G200200.1	Wheat	cytosol	79.24	85.35
TraesCS7D01G282600.1	Wheat	cytosol	76.61	85.15
TraesCS7A01G284800.1	Wheat	cytosol	78.76	82.71
GSMUA_Achr9P15560_001	Banana	cytosol	71.84	80.91
HORVU7Hr1G062090.6	Barley	cytosol	78.52	79.47
VIT_14s0006g03240.t01	Wine grape	cytosol	73.75	78.23
KRG93861	Soybean	nucleus	73.27	77.72
Solyc02g085780.2.1	Tomato	cytosol	71.84	77.18
Bra008654.1-P	Field mustard	cytosol	73.03	77.08
PGSC0003DMT400032945	Potato	extracellular	71.6	76.73
CDX69479	Canola	cytosol	72.55	76.57
CDY26488	Canola	cytosol	72.31	76.13
AT5G16040.1	Thale cress	cytosol	71.6	75.76
AT3G02510.1	Thale cress	cytosol	70.64	75.32
CDY34733	Canola	cytosol	60.14	75.22
Bra021435.1-P	Field mustard	cytosol	69.45	74.23
Zm00001d003632_P003	Maize	extracellular	25.78	24.38
Zm00001d043280_P001	Maize	cytosol	22.91	23.53
Zm00001d021372_P001	Maize	mitochondrion	21.0	20.37
Zm00001d052624_P007	Maize	plastid	21.72	19.87
Zm00001d005395_P001	Maize	cytosol	22.67	19.67
Zm00001d019595_P001	Maize	cytosol	22.67	19.67
Zm00001d033172_P001	Maize	cytosol	20.53	17.92
Zm00001d050985_P002	Maize	cytosol	21.48	16.19
Zm00001d035723_P001	Maize	cytosol, mitochondrion, nucleus, plastid	26.73	12.21
Zm00001d011805_P001	Maize	cytosol	26.25	12.06
Zm00001d017641_P004	Maize	cytosol	22.2	10.8
Zm00001d038882_P002	Maize	cytosol	26.25	10.43
Zm00001d006773_P001	Maize	cytosol	10.02	10.42
Zm00001d042074_P001	Maize	cytosol	26.49	10.17
Zm00001d002876_P001	Maize	mitochondrion	26.01	10.03
Zm00001d011851_P001	Maize	cytosol	26.49	9.93
Zm00001d011660_P003	Maize	cytosol	24.34	9.65
Zm00001d051479_P005	Maize	nucleus	22.67	8.83
Zm00001d002544_P004	Maize	cytosol, endoplasmic reticulum, nucleus	22.43	8.47
Os02t0684900-01	Rice	cytosol	0.24	0.23
Os09t0560500-01	Rice	mitochondrion, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:Zm00001d032229_P002	EnsemblPlants:Zm00001d032229_T002	EnsemblPlantsGene:Zm00001d032229	EntrezGene:100273996	Gene3D:2.130.10.30	InterPro:IPR000408
InterPro:IPR009091	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF206	PFAM:PF00415
PFAM:PF13540	PFscan:PS50012	PRINTS:PR00633	ProteinID:ONM04662.1	SUPFAM:SSF50985	UniParc:UPI0008457291
UniProt:A0A1D6KPD1	MapMan:35.1	:	:	:	:

Description

Regulator of chromosome condensation (RCC1) family protein

Coordinates

chr1:+:218000408..218005083

Molecular Weight (calculated)

44996.2 Da

IEP (calculated)

7.010

GRAVY (calculated)

-0.325

Length

419 amino acids

Sequence
(BLAST)

001: MAAPPRATAV LAWGSGEDGQ LGMGGNEEKD WAHCVEALGS YAVTAVVAGS RNSLAICEDG RLFTWGWNQR GTLGHPPKTK TESSPGPVHA LAGLKIVQAA
101: IGGWHCLAVD DNGHAYAWGR GTRFPAFSVT GFWLLTCFDA MCMDCAGGNE YGQCGEEPER KEDGTRALRR DIPTPQRCAP KLKVRQVAAG GTHSVVLTQE
201: GHVWTWGQPW PPGDIKQIST PVRVQGLEKV RVIAVGAFHN LALTEDGILW AWGNNEYGQL GTGDTQPRSH PIRVEGLSDL SLVDIAAGGW HSTALTIQGE
301: VYAWGRGEHG RLGFGDDKSS RMVPLKVELL AGEDIVQVSC GGTHSVALTR DGRMFSYGRG DHGRLGYGRK LTTGQPMGVD IDLPPPKTRS SRDGQWQAKY
401: VACGGRHTLA IVVWAETTD

Best Arabidopsis Sequence Match ( AT5G16040.1 )
(BLAST)

001: MASATSVIAW GSGEDGQLGL GTDEEKELAS VVDALEPFNV RSVVGGSRNS LAICDDGKLF TWGWNQRGTL GHPPETKTES TPSLVKSLAN VKIVQAAIGG
101: WHCLAVDDQG RAYAWGGNEY GQCGEEPSKD ETGRPVRRDI VIPKRCAQQL TVRQVAAGGT HSVVLTREGY VWTWGQPWPP GDIKQISVPV RVQGLENVRL
201: IAVGAFHNLA LKEDGTLWAW GNNEYGQLGT GDTQPRSYPI PVQGLDDLTL VDIAAGGWHS TALTNEGEVY GWGRGEHGRL GFGDNDKSSK MLPQKVNLLA
301: GEDIIQVSCG GTHSVALTRD GRIFSFGRGD HGRLGYGRKV TTGQPLELPI HIPPPEGRFN HTDEEDDGKW IAKHVACGGR HTLAIVEWKY DQEETE

Arabidopsis Description

At5g16040 [Source:UniProtKB/TrEMBL;Acc:Q9LFS0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.