Factsheet for Zm00001d050985_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07101	Sorghum	cytosol, plastid	86.87	90.28
Os02t0597000-01	Rice	cytosol	72.3	74.86
HORVU2Hr1G083590.1	Barley	cytosol	51.26	63.33
TraesCS2D01G340500.1	Wheat	cytosol	48.92	62.1
TraesCS2B01G360200.1	Wheat	cytosol	58.27	59.56
GSMUA_AchrUn_...	Banana	cytosol	46.76	48.78
Zm00001d050380_P004	Maize	cytosol	16.91	24.16
Zm00001d019595_P001	Maize	cytosol	20.86	24.02
Zm00001d005395_P001	Maize	cytosol	20.5	23.6
Zm00001d003632_P003	Maize	extracellular	18.53	23.25
Zm00001d032229_P002	Maize	mitochondrion	16.19	21.48
Zm00001d021372_P001	Maize	mitochondrion	15.29	19.68
Zm00001d052624_P007	Maize	plastid	15.65	19.0
Zm00001d033172_P001	Maize	cytosol	16.19	18.75
Zm00001d043280_P001	Maize	cytosol	13.31	18.14
Zm00001d017641_P004	Maize	cytosol	18.88	12.2
Zm00001d038882_P002	Maize	cytosol	22.84	12.04
Zm00001d042074_P001	Maize	cytosol	23.56	12.01
Zm00001d011660_P003	Maize	cytosol	22.48	11.83
Zm00001d002876_P001	Maize	mitochondrion	22.84	11.68
Zm00001d011851_P001	Maize	cytosol	23.2	11.54
Zm00001d035723_P001	Maize	cytosol, mitochondrion, nucleus, plastid	18.88	11.45
Zm00001d011805_P001	Maize	cytosol	18.35	11.18
Zm00001d051479_P005	Maize	nucleus	20.32	10.5
Zm00001d002544_P004	Maize	cytosol, endoplasmic reticulum, nucleus	19.96	10.0
Zm00001d006773_P001	Maize	cytosol	5.58	7.69

Protein Annotations

EnsemblPlants:Zm00001d050985_P002	EnsemblPlants:Zm00001d050985_T002	EnsemblPlantsGene:Zm00001d050985	EntrezGene:100279306	Gene3D:2.130.10.30	InterPro:IPR000408
InterPro:IPR009091	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF198	PFAM:PF00415
PFscan:PS50012	PRINTS:PR00633	ProteinID:AQK53405.1	ScanProsite:PS00626	SEG:seg	SUPFAM:SSF50985
UniParc:UPI0008426DFF	UniProt:A0A1D6Q4C3	MapMan:35.1	:	:	:

Description

Regulator of chromosome condensation (RCC1) family protein

Coordinates

chr4:-:135266797..135270002

Molecular Weight (calculated)

59807.1 Da

IEP (calculated)

6.128

GRAVY (calculated)

-0.105

Length

556 amino acids

Sequence
(BLAST)

001: MKRSYEYRVL CFCSHPSVEC NMQCPMDTAA SGTSPVMQFH SNADESIAHS SPLATLIQRS QRHCYGDGSP GEFPLAVSPS IVLHVLSSCD LGPKDLANLE
101: ATCVFFGKPA SFAPDFALSL PELAAFDMCQ KRTMFKQMKQ EDQECLKQRC GGSWKHVLGY ILVREKNGSR VIAGPGHSII ITSNGDVYSF GANCSGQLGL
201: GDSEDRFKPC VIRSLQGIRI TQAAVGSRCT MLVSDTGSVY SFGKEDFRVA ELVDGAHFQI TTPRIEESLK GVFVVQAAIG GYFSAVLSRE GRVYTFSWGK
301: AERLGHSSDP SDVEPRLLPG LEDVPVAYIS AGNCYLLMLA YQPNGMSVYS VGCGLGGKLG HGCKTNNGMP KLVEQFQSMS FKPVSIAAGT WHAVALGADG
401: RVCTWGWGHT GCLGHGDEEC RAVPTVVEGL RDVKAVHVST GEYTTFVVAE NGDVYSFGSG ESLAFQLDDE AEEEPDSSTP SIVSSLKDLN KKVVQISHTN
501: ASYWMNSEMG HPHTFAVMDS GDVCAFGGGV RGQLGVKLHE GVEKVRVPMN VPIGLN

Best Arabidopsis Sequence Match ( AT3G26100.2 )
(BLAST)

001: MDATSGTPSL QYINLPEQSV STTSPPVSPF QRPKRHCFGD TTPGEFPLAA NPSIVLHVLT ECRLDPRDLA NLEATCSFFS QPANFAPDIN LSLSELAALD
101: MCNKRVIFKP MNEEERQEMK RRCGGSWKLV LRFLLAGEAC CRREKSQAVA GPGHSVAVTS KGEVYTFGYN NSGQLGHGHT EDEARIQPVR SLQGVRIIQA
201: AAGAARTMLI SDDGKVYACG KESFGEAEYG GQGTKPVTTP QLVTSLKNIF VVQAAIGNYF TAVLSREGKV YTFSWGNDGR LGHQTEAADV EPRPLLGPLE
301: NVPVVQIAAG YCYLLALACQ PNGMSVYSVG CGLGGKLGHG SRTDEKYPRV IEQFQILNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES
401: VPKVVEGLSH VKAVHVATGD YTTFVVSDDG DVYSFGCGES ASLGHHPSFD EQGNRHANVL SPTVVTSLKQ VNERMVQISL TNSIYWNAHT FALTESGKLF
501: AFGAGDQGQL GTELGKNQKE RCVPEKVDID LS

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU80]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.