Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G340500.1 | Wheat | cytosol | 75.0 | 93.15 |
| HORVU2Hr1G083590.1 | Barley | cytosol | 67.83 | 82.0 |
| EES12399 | Sorghum | cytosol, plastid | 59.01 | 60.68 |
| Os02t0597000-01 | Rice | cytosol | 59.74 | 60.52 |
| KXG26580 | Sorghum | cytosol | 59.56 | 60.34 |
| Zm00001d050985_P002 | Maize | cytosol | 59.56 | 58.27 |
| GSMUA_AchrUn_... | Banana | cytosol | 50.18 | 51.22 |
| TraesCS2B01G254900.2 | Wheat | cytosol | 22.61 | 25.41 |
| TraesCS2B01G323100.1 | Wheat | unclear | 20.04 | 24.66 |
| TraesCS7B01G200200.1 | Wheat | cytosol | 17.28 | 24.16 |
| TraesCS6B01G180900.1 | Wheat | cytosol | 16.18 | 21.73 |
| TraesCS3B01G347100.2 | Wheat | cytosol | 14.52 | 19.41 |
| TraesCS5B01G366300.1 | Wheat | mitochondrion | 15.44 | 19.18 |
| TraesCS5B01G170800.1 | Wheat | cytosol | 16.73 | 18.96 |
| TraesCS7B01G090600.1 | Wheat | cytosol | 23.71 | 12.65 |
| TraesCS1B01G252700.2 | Wheat | cytosol | 24.26 | 12.05 |
| TraesCS3B01G543500.1 | Wheat | cytosol | 23.9 | 11.94 |
| TraesCS2B01G478900.1 | Wheat | cytosol, nucleus, peroxisome | 22.06 | 11.64 |
| TraesCS1B01G384600.1 | Wheat | cytosol | 22.24 | 11.53 |
| TraesCS1B01G024400.1 | Wheat | cytosol, mitochondrion, nucleus | 18.75 | 11.25 |
| TraesCS2B01G609200.1 | Wheat | cytosol | 21.88 | 11.12 |
| TraesCS3B01G581600.2 | Wheat | cytosol | 18.38 | 10.96 |
| TraesCS6B01G288400.1 | Wheat | cytosol | 20.77 | 10.59 |
Protein Annotations
| EnsemblPlants:TraesCS2B01G360200.1 | EnsemblPlantsGene:TraesCS2B01G360200 | Gene3D:2.130.10.30 | InterPro:IPR000408 | InterPro:IPR009091 | InterPro:RCC1/BLIP-II |
| InterPro:Reg_chr_condens | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF198 | PFAM:PF00415 | PFAM:PF13540 | PFscan:PS50012 |
| PRINTS:PR00633 | ScanProsite:PS00626 | SEG:seg | SUPFAM:SSF50985 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr2B:-:513473170..513475161
Molecular Weight (calculated)
58015.8 Da
IEP (calculated)
5.293
GRAVY (calculated)
-0.067
Length
544 amino acids
Sequence
(BLAST)
(BLAST)
001: MDTTASNAAL VIEFHNIVND AAAPRSPSPD PEAELMKRHF SGEEAVGQFP LTASPSILLH VLSSSDLDPK DLAALEASCT IAFLATCKFF RNPAKFPPDL
101: ELSLPELAAF DMCQHRPMFN LMKPEEKEWL KQRCGGSWKL VLGYILVGEK NCRCGKSQVN AGPGHSIVVT ASGAVYSFGM NSSGQLGLGD TEDKFKPCLI
201: RSLQGTRITH AAVGSSRTML VRDTGSVYVF GIDTFGGYSL NGMPATDYVN SPKVVESLKG IFVVQATIGG FFSAVLSREG RVYTFSWGHE ERLGHNTDSA
301: DVEPRLLSGP LENVPVAQIA AGNCYLLVLA YQPTGMSVYS VGCGQGGKLG HGDKNSEGVP QLISHFEGIN ARPVSISAGA WHAAVLSSDG RVLTWGWGFQ
401: GCLGHGYAEE CATLPMAVEI SNAVHVSAGQ YCTFVMTDNG DVYSFGWKGA YNLGLQDEDE EENQGVLSPK LVASLTGLNE RFVQISPTNA YDWHNRSTGV
501: SHTVALTESG KVYAFGGGGS GQLGIKLAEG KEAMPPLQVD VDLA
101: ELSLPELAAF DMCQHRPMFN LMKPEEKEWL KQRCGGSWKL VLGYILVGEK NCRCGKSQVN AGPGHSIVVT ASGAVYSFGM NSSGQLGLGD TEDKFKPCLI
201: RSLQGTRITH AAVGSSRTML VRDTGSVYVF GIDTFGGYSL NGMPATDYVN SPKVVESLKG IFVVQATIGG FFSAVLSREG RVYTFSWGHE ERLGHNTDSA
301: DVEPRLLSGP LENVPVAQIA AGNCYLLVLA YQPTGMSVYS VGCGQGGKLG HGDKNSEGVP QLISHFEGIN ARPVSISAGA WHAAVLSSDG RVLTWGWGFQ
401: GCLGHGYAEE CATLPMAVEI SNAVHVSAGQ YCTFVMTDNG DVYSFGWKGA YNLGLQDEDE EENQGVLSPK LVASLTGLNE RFVQISPTNA YDWHNRSTGV
501: SHTVALTESG KVYAFGGGGS GQLGIKLAEG KEAMPPLQVD VDLA
001: MDATSGTPSL QYINLPEQSV STTSPPVSPF QRPKRHCFGD TTPGEFPLAA NPSIVLHVLT ECRLDPRDLA NLEATCSFFS QPANFAPDIN LSLSELAALD
101: MCNKRVIFKP MNEEERQEMK RRCGGSWKLV LRFLLAGEAC CRREKSQAVA GPGHSVAVTS KGEVYTFGYN NSGQLGHGHT EDEARIQPVR SLQGVRIIQA
201: AAGAARTMLI SDDGKVYACG KESFGEAEYG GQGTKPVTTP QLVTSLKNIF VVQAAIGNYF TAVLSREGKV YTFSWGNDGR LGHQTEAADV EPRPLLGPLE
301: NVPVVQIAAG YCYLLALACQ PNGMSVYSVG CGLGGKLGHG SRTDEKYPRV IEQFQILNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES
401: VPKVVEGLSH VKAVHVATGD YTTFVVSDDG DVYSFGCGES ASLGHHPSFD EQGNRHANVL SPTVVTSLKQ VNERMVQISL TNSIYWNAHT FALTESGKLF
501: AFGAGDQGQL GTELGKNQKE RCVPEKVDID LS
101: MCNKRVIFKP MNEEERQEMK RRCGGSWKLV LRFLLAGEAC CRREKSQAVA GPGHSVAVTS KGEVYTFGYN NSGQLGHGHT EDEARIQPVR SLQGVRIIQA
201: AAGAARTMLI SDDGKVYACG KESFGEAEYG GQGTKPVTTP QLVTSLKNIF VVQAAIGNYF TAVLSREGKV YTFSWGNDGR LGHQTEAADV EPRPLLGPLE
301: NVPVVQIAAG YCYLLALACQ PNGMSVYSVG CGLGGKLGHG SRTDEKYPRV IEQFQILNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES
401: VPKVVEGLSH VKAVHVATGD YTTFVVSDDG DVYSFGCGES ASLGHHPSFD EQGNRHANVL SPTVVTSLKQ VNERMVQISL TNSIYWNAHT FALTESGKLF
501: AFGAGDQGQL GTELGKNQKE RCVPEKVDID LS
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU80]
SUBAcon: [cytosol,plastid]
SUBAcon: [cytosol,plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.