CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG26580	Sorghum	cytosol	78.07	76.91
HORVU2Hr1G083590.1	Barley	cytosol	53.12	62.44
TraesCS2D01G340500.1	Wheat	cytosol	51.61	62.33
TraesCS2B01G360200.1	Wheat	cytosol	60.68	59.01
EES07101	Sorghum	cytosol, plastid	56.9	56.26
GSMUA_AchrUn_...	Banana	cytosol	47.45	47.09
KXG35074	Sorghum	cytosol	21.93	24.02
KXG25196	Sorghum	cytosol	17.58	23.79
EES09892	Sorghum	mitochondrion	17.01	21.53
EES10837	Sorghum	cytosol	17.96	21.44
OQU91404	Sorghum	cytosol	18.53	20.25
EER97183	Sorghum	mitochondrion	15.69	19.21
OQU87663	Sorghum	cytosol	13.8	18.07
EES18851	Sorghum	cytosol, plastid	19.09	11.03
KXG26989	Sorghum	cytosol	22.12	10.97
KXG34127	Sorghum	cytosol	18.9	10.85
EES13137	Sorghum	cytosol	21.74	10.81
EES19890	Sorghum	cytosol	20.79	10.78
EES01332	Sorghum	cytosol	21.36	10.7
KXG34192	Sorghum	cytosol	18.15	10.53
OQU85620	Sorghum	cytosol, mitochondrion, nucleus	20.79	10.25

Protein Annotations

EnsemblPlants:EES12399	EnsemblPlantsGene:SORBI_3006G124600	EntrezGene:8060157	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091
InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF198	PFAM:PF00415	PFscan:PS50012
PRINTS:PR00633	ProteinID:EES12399	ProteinID:EES12399.1	ProteinID:OQU81820.1	ProteinID:OQU81821.1	RefSeq:XP_002448071.1
SEG:seg	SUPFAM:SSF50985	UniParc:UPI0001A870DB	UniProt:C5YAV1	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr6:-:49028748..49032120

Molecular Weight (calculated)

56987.0 Da

IEP (calculated)

7.581

GRAVY (calculated)

-0.102

Length

529 amino acids

Sequence
(BLAST)

001: MTKCRFQMDT TDSKASVVTK VHNIVNESTS HSCPSLQQIP LTSNPSLLLH VLSSYGLEPK DLAALEVACQ FFRRPAKFEP DATLSLPELA AYDTCCQKAI
101: FKSMEQKEKD SLKQRCGGSW KLVLTYLLVG EKNYHRGKSR VVAGPGHTIA VTSKGDVYSF GANSSGQLGL GNTEEQCKPC LIRSLQGIRI TQAAVGSRRT
201: MLVSDTGSVY VFGQDIFAGL EFAGDYTSSP KVVESLKGIF VVQASVGGHF SAVLSREGQV YTFCWGHDAR LGHHSDPTDL EPRLLSVPPK DALVMQIAAG
301: NCYLLMLVYQ PTGMSVYSVG CGEGGKLGHG CTISLTIPRM IQQFKTLKVK PVSVSAGAFH CAVLASDGRV FTWGWDSDTG CLGHDDKQEY VVLPTAVAGL
401: GSVKATYIST GYCSTFVVTD NGDVYSFGCD HSRNLGVKAD VGEDVRIPKL AANLNVSLNE KVVQISATNT WDWPSRSQNR ITSECHTCVL TESGRLYSLG
501: RGSEGQLGVK LAEGQKIRPA PDGVAIDLD

Best Arabidopsis Sequence Match ( AT3G26100.1 )
(BLAST)

001: MCNKRVIFKP MNEEERQEMK RRCGGSWKLV LRFLLAGEAC CRREKSQAVA GPGHSVAVTS KGEVYTFGYN NSGQLGHGHT EDEARIQPVR SLQGVRIIQA
101: AAGAARTMLI SDDGKVYACG KESFGEAEYG GQGTKPVTTP QLVTSLKNIF VVQAAIGNYF TAVLSREGKV YTFSWGNDGR LGHQTEAADV EPRPLLGPLE
201: NVPVVQIAAG YCYLLALACQ PNGMSVYSVG CGLGGKLGHG SRTDEKYPRV IEQFQILNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES
301: VPKVVEGLSH VKAVHVATGD YTTFVVSDDG DVYSFGCGES ASLGHHPSFD EQGNRHANVL SPTVVTSLKQ VNERMVQISL TNSIYWNAHT FALTESGKLF
401: AFGAGDQGQL GTELGKNQKE RCVPEKVDID LS

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU80]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.