Factsheet for TraesCS2D01G340500.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G360200.1	Wheat	cytosol	93.15	75.0
HORVU2Hr1G083590.1	Barley	cytosol	68.49	66.67
EES12399	Sorghum	cytosol, plastid	62.33	51.61
KXG26580	Sorghum	cytosol	63.24	51.58
Os02t0597000-01	Rice	cytosol	63.01	51.4
Zm00001d050985_P002	Maize	cytosol	62.1	48.92
GSMUA_AchrUn_...	Banana	cytosol	51.6	42.4
TraesCS5D01G123500.1	Wheat	mitochondrion, plastid	14.16	27.8
TraesCS2D01G241400.2	Wheat	cytosol	20.78	18.8
TraesCS2D01G304900.2	Wheat	cytosol	18.04	17.83
TraesCS1D01G078800.1	Wheat	mitochondrion	16.89	17.66
TraesCS7D01G282600.1	Wheat	cytosol	15.07	17.51
TraesCS6D01G142500.1	Wheat	golgi	16.44	16.36
TraesCS5D01G373300.1	Wheat	mitochondrion	16.21	16.21
TraesCS3D01G312300.1	Wheat	cytosol	14.84	15.97
TraesCS5D01G177900.1	Wheat	cytosol	15.53	14.17
TraesCS7D01G187100.3	Wheat	cytosol	21.46	9.21
TraesCS1D01G372300.1	Wheat	cytosol	21.23	8.83
TraesCS1D01G240700.1	Wheat	cytosol	21.92	8.78
TraesCS3D01G489600.1	Wheat	cytosol	21.69	8.72
TraesCS2D01G457000.1	Wheat	cytosol, nucleus, peroxisome	20.32	8.7
TraesCS2D01G589800.1	Wheat	cytosol	21.23	8.69
TraesCS3D01G522600.2	Wheat	cytosol	17.12	8.63
TraesCS1D01G019900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	17.58	8.47
TraesCS6D01G241800.1	Wheat	cytosol	19.18	7.92

Protein Annotations

EnsemblPlants:TraesCS2D01G340500.1	EnsemblPlantsGene:TraesCS2D01G340500	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF198	PFAM:PF00415	PFAM:PF13540	PFscan:PS50012
PRINTS:PR00633	ScanProsite:PS00626	SEG:seg	SUPFAM:SSF50985	MapMan:35.1	:

Description

No Description!

Coordinates

chr2D:-:435047157..435049200

Molecular Weight (calculated)

46712.2 Da

IEP (calculated)

6.902

GRAVY (calculated)

0.005

Length

438 amino acids

Sequence
(BLAST)

001: MDTTASNAVL VIEFQNIVND VAAPRSPSPD PEAELMKRHF SREEAVGKFP LTAIPSILLH VLSSSDLDPK DLAALEANIV LPPDLELSLP ELAALDMCQQ
101: RPMFNLMKPE EKEWLKQRCG GSWKLVLGYI LVGEKNCRRG KSQVTAGPGH SIVVTASGAV YSFGMNSSGQ LGLRDTEDKF KPCLIRSLQG IRITHAAVGS
201: SRTMLVSDTG SVYVFGIDTF GVESLKGIFV VQATIGGLFS AVLSREGRVY TFSWGHEERL GHNTDYADVE PRLLSGPLEN VLVAQIAAGN CYLLMLAYQP
301: TGMSVYSVGC GQGGKLGHGN KNSEGVPQLI AHFAGIDARP VSISAGAWHA AVLSSDGRGV LAPKLVASLT GLNKRFVQIS PTNAYDWHNR RTGVSHTVAL
401: TESGKVYAFG GGGSGQLGLK LAEGKEAMPP LQVDIDLA

Best Arabidopsis Sequence Match ( AT3G26100.2 )
(BLAST)

001: MDATSGTPSL QYINLPEQSV STTSPPVSPF QRPKRHCFGD TTPGEFPLAA NPSIVLHVLT ECRLDPRDLA NLEATCSFFS QPANFAPDIN LSLSELAALD
101: MCNKRVIFKP MNEEERQEMK RRCGGSWKLV LRFLLAGEAC CRREKSQAVA GPGHSVAVTS KGEVYTFGYN NSGQLGHGHT EDEARIQPVR SLQGVRIIQA
201: AAGAARTMLI SDDGKVYACG KESFGEAEYG GQGTKPVTTP QLVTSLKNIF VVQAAIGNYF TAVLSREGKV YTFSWGNDGR LGHQTEAADV EPRPLLGPLE
301: NVPVVQIAAG YCYLLALACQ PNGMSVYSVG CGLGGKLGHG SRTDEKYPRV IEQFQILNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES
401: VPKVVEGLSH VKAVHVATGD YTTFVVSDDG DVYSFGCGES ASLGHHPSFD EQGNRHANVL SPTVVTSLKQ VNERMVQISL TNSIYWNAHT FALTESGKLF
501: AFGAGDQGQL GTELGKNQKE RCVPEKVDID LS

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU80]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.