Factsheet for TraesCS6D01G142500.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G326100.1
TraesCS6B01G356400.1
TraesCS6D01G305800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63860.1	TraesCS6A01G326100.1	AT2G32950.1	19165148
AT5G63860.1	TraesCS6B01G356400.1	AT2G32950.1	19165148
AT5G63860.1	TraesCS6D01G305800.1	AT2G32950.1	19165148

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G180900.1	Wheat	cytosol	89.09	96.79
TraesCS6A01G153100.1	Wheat	golgi	98.41	92.13
HORVU6Hr1G030600.2	Barley	plasma membrane	92.27	91.86
Os02t0554100-01	Rice	cytosol, plasma membrane	81.14	78.81
TraesCS2D01G304900.2	Wheat	cytosol	75.91	75.39
GSMUA_Achr6P17690_001	Banana	cytosol	70.91	71.07
GSMUA_Achr3P19000_001	Banana	nucleus	71.82	70.38
VIT_07s0031g02560.t01	Wine grape	cytosol	69.77	68.99
CDX81201	Canola	cytosol	68.18	68.18
Bra037755.1-P	Field mustard	cytosol	64.32	68.03
AT5G63860.1	Thale cress	cytosol	67.5	67.5
Bra029198.1-P	Field mustard	cytosol	63.18	67.48
CDY31347	Canola	cytosol	66.82	67.43
CDY60046	Canola	cytosol	68.41	67.19
CDY43762	Canola	cytosol	65.0	66.82
Bra024242.1-P	Field mustard	cytosol	62.27	66.67
Solyc05g018620.2.1	Tomato	cytosol	45.68	65.47
CDY39843	Canola	cytosol	59.77	65.1
CDX84451	Canola	cytosol	65.68	64.8
KRH59606	Soybean	cytosol	62.27	62.7
KRH63996	Soybean	nucleus	66.82	61.0
KRH53944	Soybean	plastid	65.68	60.97
KRH40960	Soybean	cytosol	44.55	57.99
TraesCS7D01G282600.1	Wheat	cytosol	23.86	27.85
TraesCS1D01G078800.1	Wheat	mitochondrion	23.64	24.82
TraesCS5D01G373300.1	Wheat	mitochondrion	23.64	23.74
TraesCS5D01G123500.1	Wheat	mitochondrion, plastid	11.82	23.32
TraesCS2D01G241400.2	Wheat	cytosol	24.77	22.52
TraesCS3D01G312300.1	Wheat	cytosol	20.68	22.36
TraesCS5D01G177900.1	Wheat	cytosol	23.86	21.88
TraesCS2D01G340500.1	Wheat	cytosol	16.36	16.44
TraesCS3D01G522600.2	Wheat	cytosol	30.68	15.54
TraesCS3D01G489600.1	Wheat	cytosol	37.05	14.97
TraesCS1D01G019900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	30.91	14.96
TraesCS1D01G240700.1	Wheat	cytosol	36.82	14.82
TraesCS7D01G187100.3	Wheat	cytosol	32.95	14.2
TraesCS2D01G589800.1	Wheat	cytosol	31.82	13.08
TraesCS1D01G372300.1	Wheat	cytosol	30.91	12.92
TraesCS2D01G457000.1	Wheat	cytosol, nucleus, peroxisome	28.64	12.32
TraesCS6D01G241800.1	Wheat	cytosol	27.5	11.4

Protein Annotations

Gene3D:2.130.10.30	MapMan:26.1.3.1	GO:GO:0003674	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515
GO:GO:0008150	GO:GO:0009628	GO:GO:0009881	GO:GO:0010224	GO:GO:0038023	GO:GO:0042803
InterPro:IPR000408	InterPro:IPR009091	PFAM:PF00415	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012
PANTHER:PTHR22870	PANTHER:PTHR22870:SF317	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SUPFAM:SSF50985	EnsemblPlantsGene:TraesCS6D01G142500
EnsemblPlants:TraesCS6D01G142500.1	InterPro:UVR8	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr6D:+:112816572..112828757

Molecular Weight (calculated)

47206.3 Da

IEP (calculated)

5.678

GRAVY (calculated)

-0.361

Length

440 amino acids

Sequence
(BLAST)

001: MDAKAEASVD DAVPEAPEQS VVLISAGANH SVALLSGQMV CSWGRGEDGQ LGHGDSEDRP VPTVLTSFDV PRITSVVCGA DHTAAYSDDE MQLYSWGWGD
101: FGRLGHGNSS DVFNPQPVVA LQGMKIKQVA CGDSHCLAVT VTGQVHSWGR NQNGQLGLGN NEDSLLPQKI KAFEGVCVKM IAAGAEHTTA ITEDGHLYGW
201: GWGRYGNLGL SDRDDRSVPE KVSSVEGEKM VLVACGWRHS VTVSSSGGLY TYGWSKYGQL GHGDFEDHLV PRKLEALKDV SISQIAGGWR HTMAVASDGK
301: LYGWGWNKFG QVGVGDDVDH CSPVEVNFPD EQKIAQVACG WRHTLALTEN KNVFSWGRGA SGQLGHGEII DRNTPKMIDA LSLDGSACKQ LESSNAVPMT
401: AKVWVPPSKR FAIVPEENVS KPGNGTDKHA PEGDAKRMRV

Best Arabidopsis Sequence Match ( AT3G02510.1 )
(BLAST)

001: MVTATSIIAW GSGEDGQLGI GTNEEKEWAC VVEALEPYSV RSVVSGSRNS LAICDDGTMF TWGWNQRGTL GHQPETKTEN IPSRVKALAN VKITQAAIGG
101: WHCLAVDDQG RAYAWGGNEY GQCGEEPLKD EMGRPVRRDI VIPKRCAPKL TVRQVAAGGT HSVVLTREGH VWTWGQPWPP GDIKQISVPV RVQGLENVRL
201: IAVGAFHNLA LEEDGRLLAW GNNEYGQLGT GDTQPTSHPV PVQGLDDLTL VDIAAGGWHS TALTDKGEVY GWGRGEHGRL GLGDNDKSSK MVPQKVNLLA
301: EEDIIQVSCG GTHSVALTRD GRIFSFGRGD HGRLGYGRKV TTGQPLELPI KIPPPEGSFN HTDEEEEGKW SAKSIACGGR HTLAIVEWKS DDI

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:Q0WSJ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.