Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G326100.1 | |
| TraesCS6B01G356400.1 | |
| TraesCS6D01G305800.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G63860.1 | TraesCS6A01G326100.1 | AT2G32950.1 | 19165148 |
| AT5G63860.1 | TraesCS6B01G356400.1 | AT2G32950.1 | 19165148 |
| AT5G63860.1 | TraesCS6D01G305800.1 | AT2G32950.1 | 19165148 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6D01G142500.1 | Wheat | golgi | 96.79 | 89.09 |
| HORVU6Hr1G030600.2 | Barley | plasma membrane | 91.11 | 83.48 |
| TraesCS6A01G153100.1 | Wheat | golgi | 96.05 | 82.77 |
| Os02t0554100-01 | Rice | cytosol, plasma membrane | 81.48 | 72.85 |
| TraesCS2B01G323100.1 | Wheat | unclear | 75.56 | 69.23 |
| GSMUA_Achr6P17690_001 | Banana | cytosol | 71.36 | 65.83 |
| Solyc05g018620.2.1 | Tomato | cytosol | 49.63 | 65.47 |
| GSMUA_Achr3P19000_001 | Banana | nucleus | 72.35 | 65.26 |
| VIT_07s0031g02560.t01 | Wine grape | cytosol | 69.88 | 63.6 |
| CDX81201 | Canola | cytosol | 68.89 | 63.41 |
| CDY31347 | Canola | cytosol | 67.65 | 62.84 |
| AT5G63860.1 | Thale cress | cytosol | 68.15 | 62.73 |
| CDY60046 | Canola | cytosol | 69.14 | 62.5 |
| Bra037755.1-P | Field mustard | cytosol | 64.2 | 62.5 |
| Bra029198.1-P | Field mustard | cytosol | 63.46 | 62.38 |
| CDY43762 | Canola | cytosol | 65.43 | 61.92 |
| Bra024242.1-P | Field mustard | cytosol | 62.22 | 61.31 |
| CDY39843 | Canola | cytosol | 60.0 | 60.15 |
| CDX84451 | Canola | cytosol | 66.17 | 60.09 |
| KRH59606 | Soybean | cytosol | 63.46 | 58.81 |
| KRH63996 | Soybean | nucleus | 67.16 | 56.43 |
| KRH53944 | Soybean | plastid | 65.68 | 56.12 |
| KRH40960 | Soybean | cytosol | 44.94 | 53.85 |
| TraesCS7B01G200200.1 | Wheat | cytosol | 24.2 | 25.19 |
| TraesCS5B01G366300.1 | Wheat | mitochondrion | 24.44 | 22.6 |
| TraesCS2B01G254900.2 | Wheat | cytosol | 24.94 | 20.87 |
| TraesCS3B01G347100.2 | Wheat | cytosol | 20.49 | 20.39 |
| TraesCS5B01G170800.1 | Wheat | cytosol | 22.96 | 19.38 |
| TraesCS2B01G360200.1 | Wheat | cytosol | 21.73 | 16.18 |
| TraesCS1B01G024400.1 | Wheat | cytosol, mitochondrion, nucleus | 30.37 | 13.56 |
| TraesCS3B01G543500.1 | Wheat | cytosol | 36.05 | 13.41 |
| TraesCS3B01G581600.2 | Wheat | cytosol | 30.12 | 13.38 |
| TraesCS1B01G252700.2 | Wheat | cytosol | 36.05 | 13.33 |
| TraesCS7B01G090600.1 | Wheat | cytosol | 31.85 | 12.65 |
| TraesCS1B01G384600.1 | Wheat | cytosol | 30.86 | 11.92 |
| TraesCS2B01G609200.1 | Wheat | cytosol | 31.11 | 11.78 |
| TraesCS2B01G478900.1 | Wheat | cytosol, nucleus, peroxisome | 28.89 | 11.35 |
| TraesCS6B01G288400.1 | Wheat | cytosol | 27.65 | 10.5 |
Protein Annotations
| Gene3D:2.130.10.30 | MapMan:26.1.3.1 | GO:GO:0003674 | GO:GO:0004871 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0008150 | GO:GO:0009628 | GO:GO:0009881 | GO:GO:0010224 | GO:GO:0038023 | GO:GO:0042803 |
| InterPro:IPR000408 | InterPro:IPR009091 | PFAM:PF00415 | PFAM:PF13540 | PRINTS:PR00633 | ScanProsite:PS00626 |
| PFscan:PS50012 | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF317 | InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens | SUPFAM:SSF50985 |
| EnsemblPlantsGene:TraesCS6B01G180900 | EnsemblPlants:TraesCS6B01G180900.1 | InterPro:UVR8 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr6B:+:202117162..202127730
Molecular Weight (calculated)
43458.1 Da
IEP (calculated)
6.452
GRAVY (calculated)
-0.394
Length
405 amino acids
Sequence
(BLAST)
(BLAST)
001: MDAKVEAAGD DAVPEAPEQS IVLISAGANH SVALLSGQMV CSWGRGEDGQ LGHGDSEDRP CRRGDFGRLG HGNSSDVFNP QPVVALQGMK IKQIACGDSH
101: CLAVTVTGQV HSWGRNQNGQ LGLGNNEDSL LPQKIKAFEG VCVKMIAAGA EHTTAITEDG HLYGWGWGRY GNLGLSDRDD RSVPEKVSSV EGEKMALVAC
201: GWRHSVTVSS SGGLYTYGWS KYGQLGHGDF EDHLVPRKLE ALKDVSISQI AGGWRHTMAV ASDGKLYGWG WNKFGQVGVG DNIDHCSPVE VNFPDEQKIA
301: QVACGWRHTL ALTENKNVFS WGRVASGQLG HGEIIDRNTP KMIDALSLDG SACKQLESSN AVPMIAKVWV PPSKRFAIVP EENVSKPGNG TDKHAPEGDA
401: KRMRV
101: CLAVTVTGQV HSWGRNQNGQ LGLGNNEDSL LPQKIKAFEG VCVKMIAAGA EHTTAITEDG HLYGWGWGRY GNLGLSDRDD RSVPEKVSSV EGEKMALVAC
201: GWRHSVTVSS SGGLYTYGWS KYGQLGHGDF EDHLVPRKLE ALKDVSISQI AGGWRHTMAV ASDGKLYGWG WNKFGQVGVG DNIDHCSPVE VNFPDEQKIA
301: QVACGWRHTL ALTENKNVFS WGRVASGQLG HGEIIDRNTP KMIDALSLDG SACKQLESSN AVPMIAKVWV PPSKRFAIVP EENVSKPGNG TDKHAPEGDA
401: KRMRV
0001: MSRNGRMASD LSRAGPVERD IEQAIIALKK GAYLLKYGRR GKPKFCPFRL SNDETVLIWF SGNEEKHLKL SHVSRIISGQ RTPIFQRYPR PEKEYQSFSL
0101: IYSERSLDVI CKDKDEAEVW FTGLKALISH CHQRNRRTES RSDGTPSEAN SPRTYTRRSS PLHSPFSSND SLQKDGSNHL RIHSPFESPP KNGLDKAFSD
0201: MALYAVPPKG FYPSDSATIS VHSGGSDSMH GHMRGMGMDA FRVSMSSAVS SSSHGSGHDD GDALGDVFIW GEGIGEGVLG GGNRRVGSSF DIKMDSLLPK
0301: ALESTIVLDV QNIACGGQHA VLVTKQGESF SWGEESEGRL GHGVDSNIQQ PKLIDALNTT NIELVACGEF HSCAVTLSGD LYTWGKGDFG VLGHGNEVSH
0401: WVPKRVNFLL EGIHVSSIAC GPYHTAVVTS AGQLFTFGDG TFGVLGHGDK KSVFIPREVD SLKGLRTVRA ACGVWHTAAV VEVMVGSSSS SNCSSGKLFT
0501: WGDGDKGRLG HGNKEPKLVP TCVAALVEPN FCQVACGHSL TVALTTSGHV YTMGSPVYGQ LGNSHADGKT PNRVEGKLHK SFVEEIACGA YHVAVLTSRT
0601: EVYTWGKGSN GRLGHGDVDD RNSPTLVESL KDKQVKSIAC GTNFTAAVCI HRWASGMDQS MCSGCRQPFS FKRKRHNCYN CGLVFCHSCT SKKSLKACMA
0701: PNPNKPYRVC DKCFNKLKKT METDPSSHSS LSRRGSINQG SDPIDKDDKF DSRSDGQLAR FSLMESMRQV DSRHKKNKKY EFNSSRVSPI PSGSSQRGAL
0801: NIAKSFNPVF GASKKFFSAS VPGSRIVSRA TSPISRRPSP PRSTTPTPTL SGLATPKFVV DDTKRTNDNL SQEVVKLRSQ VESLTRKAQL QEVELERTTK
0901: QLKEALAITN EETTRCKAAK EVIKSLTAQL KDMAERLPVG SARTVKSPPS LNSFGSSPGR IDPFNILNQA NSQESEPNGI TTPMFSNGTM TPAFGNGEAT
1001: NEARNEKEWV EQDEPGVYIT LTALAGGARD LKRVRFSRKR FSEIQAEQWW ADNRGRVYEQ YNVRMVDKAS EDLPR
0101: IYSERSLDVI CKDKDEAEVW FTGLKALISH CHQRNRRTES RSDGTPSEAN SPRTYTRRSS PLHSPFSSND SLQKDGSNHL RIHSPFESPP KNGLDKAFSD
0201: MALYAVPPKG FYPSDSATIS VHSGGSDSMH GHMRGMGMDA FRVSMSSAVS SSSHGSGHDD GDALGDVFIW GEGIGEGVLG GGNRRVGSSF DIKMDSLLPK
0301: ALESTIVLDV QNIACGGQHA VLVTKQGESF SWGEESEGRL GHGVDSNIQQ PKLIDALNTT NIELVACGEF HSCAVTLSGD LYTWGKGDFG VLGHGNEVSH
0401: WVPKRVNFLL EGIHVSSIAC GPYHTAVVTS AGQLFTFGDG TFGVLGHGDK KSVFIPREVD SLKGLRTVRA ACGVWHTAAV VEVMVGSSSS SNCSSGKLFT
0501: WGDGDKGRLG HGNKEPKLVP TCVAALVEPN FCQVACGHSL TVALTTSGHV YTMGSPVYGQ LGNSHADGKT PNRVEGKLHK SFVEEIACGA YHVAVLTSRT
0601: EVYTWGKGSN GRLGHGDVDD RNSPTLVESL KDKQVKSIAC GTNFTAAVCI HRWASGMDQS MCSGCRQPFS FKRKRHNCYN CGLVFCHSCT SKKSLKACMA
0701: PNPNKPYRVC DKCFNKLKKT METDPSSHSS LSRRGSINQG SDPIDKDDKF DSRSDGQLAR FSLMESMRQV DSRHKKNKKY EFNSSRVSPI PSGSSQRGAL
0801: NIAKSFNPVF GASKKFFSAS VPGSRIVSRA TSPISRRPSP PRSTTPTPTL SGLATPKFVV DDTKRTNDNL SQEVVKLRSQ VESLTRKAQL QEVELERTTK
0901: QLKEALAITN EETTRCKAAK EVIKSLTAQL KDMAERLPVG SARTVKSPPS LNSFGSSPGR IDPFNILNQA NSQESEPNGI TTPMFSNGTM TPAFGNGEAT
1001: NEARNEKEWV EQDEPGVYIT LTALAGGARD LKRVRFSRKR FSEIQAEQWW ADNRGRVYEQ YNVRMVDKAS EDLPR
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4K0X5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.