Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G187100.3 | Wheat | cytosol | 96.86 | 96.77 |
| TraesCS7A01G185400.1 | Wheat | cytosol | 93.53 | 94.27 |
| HORVU7Hr1G038070.12 | Barley | cytosol | 85.98 | 93.0 |
| VIT_12s0057g00540.t01 | Wine grape | cytosol, mitochondrion | 10.88 | 59.68 |
| VIT_01s0026g02170.t01 | Wine grape | cytosol | 46.47 | 52.2 |
| KRH45886 | Soybean | nucleus | 47.45 | 50.84 |
| GSMUA_Achr4P00510_001 | Banana | cytosol | 47.45 | 50.36 |
| TraesCS1B01G252700.2 | Wheat | cytosol | 52.75 | 49.13 |
| TraesCS3B01G543500.1 | Wheat | cytosol | 52.25 | 48.94 |
| KRG99112 | Soybean | cytosol | 46.57 | 48.47 |
| VIT_17s0000g05980.t01 | Wine grape | endoplasmic reticulum | 32.65 | 48.19 |
| Solyc03g116360.1.1 | Tomato | cytosol | 42.94 | 46.3 |
| PGSC0003DMT400059356 | Potato | cytosol | 46.27 | 45.78 |
| AT1G69710.1 | Thale cress | cytosol | 44.12 | 43.23 |
| CDY28580 | Canola | plasma membrane | 43.24 | 42.24 |
| CDY44086 | Canola | plasma membrane, vacuole | 43.43 | 42.11 |
| CDX77871 | Canola | cytosol | 37.94 | 40.78 |
| CDY21795 | Canola | cytosol | 38.04 | 40.54 |
| Bra019511.1-P | Field mustard | cytosol | 37.94 | 40.44 |
| TraesCS1B01G024400.1 | Wheat | cytosol, mitochondrion, nucleus | 34.9 | 39.25 |
| TraesCS1B01G384600.1 | Wheat | cytosol | 40.1 | 38.99 |
| PGSC0003DMT400001620 | Potato | cytosol | 15.2 | 38.75 |
| TraesCS2B01G609200.1 | Wheat | cytosol | 40.49 | 38.6 |
| Bra007876.1-P | Field mustard | cytosol, nucleus, plasma membrane | 43.43 | 38.26 |
| TraesCS3B01G581600.2 | Wheat | cytosol | 33.82 | 37.83 |
| AT3G47660.4 | Thale cress | cytosol | 36.37 | 37.47 |
| TraesCS2B01G478900.1 | Wheat | cytosol, nucleus, peroxisome | 34.71 | 34.34 |
| GSMUA_Achr7P20980_001 | Banana | cytosol | 47.94 | 33.65 |
| TraesCS6B01G288400.1 | Wheat | cytosol | 33.53 | 32.05 |
| TraesCS6B01G180900.1 | Wheat | cytosol | 12.65 | 31.85 |
| TraesCS2B01G323100.1 | Wheat | unclear | 13.73 | 31.67 |
| TraesCS7B01G200200.1 | Wheat | cytosol | 10.88 | 28.53 |
| TraesCS5B01G366300.1 | Wheat | mitochondrion | 11.47 | 26.71 |
| TraesCS2B01G254900.2 | Wheat | cytosol | 12.65 | 26.65 |
| TraesCS5B01G170800.1 | Wheat | cytosol | 11.96 | 25.42 |
| TraesCS3B01G347100.2 | Wheat | cytosol | 9.8 | 24.57 |
| TraesCS2B01G360200.1 | Wheat | cytosol | 12.65 | 23.71 |
Protein Annotations
| Gene3D:2.130.10.30 | Gene3D:2.30.29.30 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:Brevis_radix_dom | ncoils:Coil |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000408 | InterPro:IPR001849 | InterPro:IPR009091 |
| InterPro:IPR011993 | InterPro:IPR013083 | InterPro:IPR013591 | InterPro:IPR017455 | PFAM:PF00415 | PFAM:PF01363 |
| PFAM:PF08381 | InterPro:PH-like_dom_sf | InterPro:PH_domain | PRINTS:PR00633 | ScanProsite:PS00626 | PFscan:PS50012 |
| PFscan:PS50178 | PFscan:PS51514 | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF244 | InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens |
| SMART:SM00064 | SMART:SM00233 | SUPFAM:SSF50729 | SUPFAM:SSF50985 | SUPFAM:SSF57903 | EnsemblPlantsGene:TraesCS7B01G090600 |
| EnsemblPlants:TraesCS7B01G090600.1 | InterPro:Znf_FYVE | InterPro:Znf_FYVE-rel | InterPro:Znf_FYVE_PHD | InterPro:Znf_RING/FYVE/PHD | TIGR:cd00065 |
| TIGR:cd13365 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr7B:-:104762545..104770520
Molecular Weight (calculated)
111417.0 Da
IEP (calculated)
8.444
GRAVY (calculated)
-0.392
Length
1020 amino acids
Sequence
(BLAST)
(BLAST)
0001: MAADYSKNDP FERNVEQAIT TLKKGTHLLK YGWRGKPKFC PFRLSNDETM LIWYSGRMEK KLNLIQVSKI IPGQRTAIFL RHPRPDKEHQ SFSLIYGQRS
0101: LDLICKDKDE AEAWFVALKA IISRRNCKKL TTETKNDKPS YCPINQMHGD LPLASSCYST DVGKKVSKGV QQCATNHDAR PFANFGNIFS DVILYTGQER
0201: SRVSTGSVSS SNSSISGSAD TSDGGVAVDN NLRVSYSSAV SSCSYGSGDD FDAMGDVLLW GKGVGDGTLA YSSHLSGNLY GPRIDASLPK ALESTVLLDI
0301: HKIACGSKHS VLVTKQGEMY SWGEESGGRL GHGVDTNLTH PKLISTLSGI NIESVACGEF HTCAVSFCGD LYTWGDGMHN FGLLGHGNDT AHWIPKKVCG
0401: PLEGLHISSV SCGPWHTAVV TSTGQLFTFG DGVFGALGHG DRQSTNVARE VSSLRGLHTV RAACGAWHTV AIVEVVDSLN SATSCKLFTW GDGNKGQLGH
0501: ADRETRLIPA CVESLRKLSF CQVACGYDFT AALSTSGQVY TMGSNAFGQL GNPTIDGKHP TVVKGSIFSS CVEEIACGSH HVALLTSKAR VYTWGKGANG
0601: RLGHGNNFDR NTPTLVEALK DKQVKSVACG TDFTAVICFH RCTSGLDQSL CSGCRLQFSF IRKRHNCYNC GLVYCKACSM RKSTKASLAP NSNKPYRVCD
0701: ECCTKLNTAG DAKKLQNSKP LDGNPHPLSS EATDRENTVK SLRVRLSRFL TMESFKPEGK YSRNNSRFPL HHSGNLSLGS IGHSKELASL CIPTSTALPL
0801: SRGPISPHPT NRLTTSVLTS PDSACAYPSN KNMTEEVATL QSQVKELTCK SELLEAELDR TNNQLREART TAAEENLKCK AAKEVISSLT TKIRSITERT
0901: PEECPVNDTW TSQVSKLLGS HFCENHLNDV SRSPDSSAHL AHQSPCKGNS IVADMEWTEQ VERGVYITLF RSPAGHKYLR RVRFSKRHFT EQQAERWWAE
1001: HRPTLHQQYG ILTGDSIIPS
0101: LDLICKDKDE AEAWFVALKA IISRRNCKKL TTETKNDKPS YCPINQMHGD LPLASSCYST DVGKKVSKGV QQCATNHDAR PFANFGNIFS DVILYTGQER
0201: SRVSTGSVSS SNSSISGSAD TSDGGVAVDN NLRVSYSSAV SSCSYGSGDD FDAMGDVLLW GKGVGDGTLA YSSHLSGNLY GPRIDASLPK ALESTVLLDI
0301: HKIACGSKHS VLVTKQGEMY SWGEESGGRL GHGVDTNLTH PKLISTLSGI NIESVACGEF HTCAVSFCGD LYTWGDGMHN FGLLGHGNDT AHWIPKKVCG
0401: PLEGLHISSV SCGPWHTAVV TSTGQLFTFG DGVFGALGHG DRQSTNVARE VSSLRGLHTV RAACGAWHTV AIVEVVDSLN SATSCKLFTW GDGNKGQLGH
0501: ADRETRLIPA CVESLRKLSF CQVACGYDFT AALSTSGQVY TMGSNAFGQL GNPTIDGKHP TVVKGSIFSS CVEEIACGSH HVALLTSKAR VYTWGKGANG
0601: RLGHGNNFDR NTPTLVEALK DKQVKSVACG TDFTAVICFH RCTSGLDQSL CSGCRLQFSF IRKRHNCYNC GLVYCKACSM RKSTKASLAP NSNKPYRVCD
0701: ECCTKLNTAG DAKKLQNSKP LDGNPHPLSS EATDRENTVK SLRVRLSRFL TMESFKPEGK YSRNNSRFPL HHSGNLSLGS IGHSKELASL CIPTSTALPL
0801: SRGPISPHPT NRLTTSVLTS PDSACAYPSN KNMTEEVATL QSQVKELTCK SELLEAELDR TNNQLREART TAAEENLKCK AAKEVISSLT TKIRSITERT
0901: PEECPVNDTW TSQVSKLLGS HFCENHLNDV SRSPDSSAHL AHQSPCKGNS IVADMEWTEQ VERGVYITLF RSPAGHKYLR RVRFSKRHFT EQQAERWWAE
1001: HRPTLHQQYG ILTGDSIIPS
0001: MCILELRLFA AASMADSLRT SFSERDVEQA ITSLKKGSYL LKYGRRGKPK FCPFQLTSDE SALVWYSGKE EKQIKLSQVL RIVPGQRTPT FKRYPRPEKE
0101: YQSFSLICPD RSLDLICKDK DEAEVWVVGL KSLITRVKVS KWKTTIKPEI TSAECPTPHA RRVSPFVTIL DQVIQPSNET STQTRLGKVF SDIVAITAPP
0201: SNNNQTEASG NLFCPFSPTP ANVENSNLRF STNDPFRLSL SSAVSTSSHG SYHEDFDALG DVFVWGESIS DGVLSGTGNS LNSTTEDALL PKALESTIVL
0301: DAQNIACGKC HAVLVTKQGE IFSWGEGKGG KLGHGLETDA QKPKFISSVR GLGFKSLACG DFHTCAITQS GDLYSWGDGT HNVDLLGHGN ESSCWIPKRV
0401: TGDLQGLYVS DVACGPWHTA VVASSGQLFT FGDGTFGALG HGDRRSTSVP REVESLIGLI VTKVACGVWH TAAVVEVTNE ASEAEVDSSR GQVFTWGDGE
0501: KGQLGHGDND TKLLPECVIS LTNENICQVA CGHSLTVSRT SRGHVYTMGS TAYGQLGNPT AKGNFPERVE GDIVEASVEE IACGSYHVAV LTSKSEIYTW
0601: GKGLNGQLGH GNVENKREPA VVGFLREKQV KAITCGSNFT AVICVHKWVP GSEHSLCAGC RNPFNFRRKR HNCYNCGLVF CKVCSSRKSL RAALAPDMNK
0701: PYRVCYGCFT KLKKSRESSP STPTSRTRKL LNMRKSTDVS ERDSLTQKFL SVNARLSSAD SSLHYSERRH HRRDLKPEVN NSNVFPSMNG SLQPVGSPFS
0801: KGSTALPKIP KNMMVKIPGS GMSSRTTSPV SVKSTSPRRS YEVAAAESKQ LKDSFNQDMA GLKEQVEQLA SKAHQLEEEL EKTKRQLKVV TAMAADEAEE
0901: NRSAKEVIRS LTTQLKEMAE KQSQKDSIST NSKHTDKEKS ETVTQTSNQT HIRSMVSQDS QNENNLTSKS FANGHRKQND KPEKVVQDEP GVYLTLLSLP
1001: GGGTELKRVR FSRKQFTEEQ AEKWWGENGA KVCERHNILV S
0101: YQSFSLICPD RSLDLICKDK DEAEVWVVGL KSLITRVKVS KWKTTIKPEI TSAECPTPHA RRVSPFVTIL DQVIQPSNET STQTRLGKVF SDIVAITAPP
0201: SNNNQTEASG NLFCPFSPTP ANVENSNLRF STNDPFRLSL SSAVSTSSHG SYHEDFDALG DVFVWGESIS DGVLSGTGNS LNSTTEDALL PKALESTIVL
0301: DAQNIACGKC HAVLVTKQGE IFSWGEGKGG KLGHGLETDA QKPKFISSVR GLGFKSLACG DFHTCAITQS GDLYSWGDGT HNVDLLGHGN ESSCWIPKRV
0401: TGDLQGLYVS DVACGPWHTA VVASSGQLFT FGDGTFGALG HGDRRSTSVP REVESLIGLI VTKVACGVWH TAAVVEVTNE ASEAEVDSSR GQVFTWGDGE
0501: KGQLGHGDND TKLLPECVIS LTNENICQVA CGHSLTVSRT SRGHVYTMGS TAYGQLGNPT AKGNFPERVE GDIVEASVEE IACGSYHVAV LTSKSEIYTW
0601: GKGLNGQLGH GNVENKREPA VVGFLREKQV KAITCGSNFT AVICVHKWVP GSEHSLCAGC RNPFNFRRKR HNCYNCGLVF CKVCSSRKSL RAALAPDMNK
0701: PYRVCYGCFT KLKKSRESSP STPTSRTRKL LNMRKSTDVS ERDSLTQKFL SVNARLSSAD SSLHYSERRH HRRDLKPEVN NSNVFPSMNG SLQPVGSPFS
0801: KGSTALPKIP KNMMVKIPGS GMSSRTTSPV SVKSTSPRRS YEVAAAESKQ LKDSFNQDMA GLKEQVEQLA SKAHQLEEEL EKTKRQLKVV TAMAADEAEE
0901: NRSAKEVIRS LTTQLKEMAE KQSQKDSIST NSKHTDKEKS ETVTQTSNQT HIRSMVSQDS QNENNLTSKS FANGHRKQND KPEKVVQDEP GVYLTLLSLP
1001: GGGTELKRVR FSRKQFTEEQ AEKWWGENGA KVCERHNILV S
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I287]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.