Factsheet for Bra007876.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 2
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plasma membrane
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44086	Canola	plasma membrane, vacuole	87.31	96.1
CDY28580	Canola	plasma membrane	86.1	95.5
AT1G69710.1	Thale cress	cytosol	72.97	81.17
VIT_12s0057g00540.t01	Wine grape	cytosol, mitochondrion	9.33	58.06
KRH45886	Soybean	nucleus	45.77	55.67
VIT_01s0026g02170.t01	Wine grape	cytosol	42.49	54.19
KRG99112	Soybean	cytosol	44.21	52.24
PGSC0003DMT400059356	Potato	cytosol	44.91	50.44
GSMUA_Achr4P00510_001	Banana	cytosol	40.16	48.39
Bra008895.1-P	Field mustard	nucleus	43.26	47.09
Bra006504.1-P	Field mustard	cytosol	43.61	45.78
Bra023374.1-P	Field mustard	nucleus	43.78	45.59
Bra002235.1-P	Field mustard	nucleus	42.23	43.9
TraesCS7A01G185400.1	Wheat	cytosol	38.17	43.68
TraesCS7B01G090600.1	Wheat	cytosol	38.26	43.43
TraesCS7D01G187100.3	Wheat	cytosol	38.08	43.19
HORVU7Hr1G038070.12	Barley	cytosol	34.46	42.31
Bra019511.1-P	Field mustard	cytosol	34.89	42.22
Bra016214.1-P	Field mustard	cytosol	37.91	41.81
Bra015708.1-P	Field mustard	cytosol	38.26	41.25
Bra003698.1-P	Field mustard	mitochondrion	37.82	40.67
Bra023740.1-P	Field mustard	cytosol	34.89	37.9
Bra038181.1-P	Field mustard	cytosol	30.05	34.73
Bra016304.1-P	Field mustard	cytosol	10.36	32.52
Bra024242.1-P	Field mustard	cytosol	11.31	31.87
GSMUA_Achr7P20980_001	Banana	cytosol	39.9	31.8
Bra029198.1-P	Field mustard	cytosol	11.31	31.8
Bra037755.1-P	Field mustard	cytosol	11.23	31.25
Bra014931.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	33.42	30.47
Bra024664.1-P	Field mustard	cytosol	9.24	29.8
Bra028647.1-P	Field mustard	mitochondrion	10.88	28.83
Bra013002.1-P	Field mustard	mitochondrion	10.79	28.22
Bra039169.1-P	Field mustard	cytosol	10.79	26.54
Bra008654.1-P	Field mustard	cytosol	8.98	26.2
Bra021435.1-P	Field mustard	cytosol	8.72	25.77
Bra027244.1-P	Field mustard	cytosol	10.71	25.31
Bra004253.1-P	Field mustard	plastid	10.88	24.32
Bra004074.1-P	Field mustard	cytosol, plastid	10.62	23.7
Bra025182.1-P	Field mustard	cytosol	10.62	23.25
Bra017335.1-P	Field mustard	cytosol	10.62	23.16
Bra036349.1-P	Field mustard	cytosol, plastid	10.36	21.86
Bra021109.1-P	Field mustard	endoplasmic reticulum, extracellular	11.23	15.82

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	InterPro:BRX_N	EnsemblPlantsGene:Bra007876
EnsemblPlants:Bra007876.1	EnsemblPlants:Bra007876.1-P	InterPro:Brevis_radix_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	GO:GO:0046872	InterPro:IPR000408	InterPro:IPR009091
InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR013591	InterPro:IPR017455	UniProt:M4CUI1	PFAM:PF00415
PFAM:PF01363	PFAM:PF03134	PFAM:PF08381	PFAM:PF13713	InterPro:PH-like_dom_sf	PRINTS:PR00633
ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF183
InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903
InterPro:TB2_DP1_HVA22	TMHMM:TMhelix	UniParc:UPI0002546873	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

AT1G69710 (E=0.0) | zinc finger protein, putative / regulator of chromosome condensation (RCC1) family protein

Coordinates

chrA02:+:11482409..11490529

Molecular Weight (calculated)

128194.0 Da

IEP (calculated)

8.471

GRAVY (calculated)

-0.413

Length

1158 amino acids

Sequence
(BLAST)

0001: MPSNSGDDNV LQILIKNFDV LALYASVKAI ETKSLAEDEQ WLTYWVLYAI ISLFELIFSK LLDWFPIWPF LKLIGICWLV LPQFNGAEHV YRHFIRPFYM
0101: NPQRASTNIW YVPQKKLNFF PKRDDDDILT AAEKYMEKHG TDAFERMIVR AITSLKKGSY LLKYGRRGKP KFCPFQLTSD ESTLVWYSGK EEKQIKLSQV
0201: LRIVPGQRTA TFKRYPRPEK EYQSFSLICP DRSLDLICKD KDEAEVWVVG LKALITRVKI SKWKNTIKPE ITSPECPTPQ ARRVSPFVSI LDQVTQPSTE
0301: TSTPNRLGKV FSDIVSITAP ANNNQTEANT LNPNLYCPIS PGNVENPNSR FSTGGDLARL SLSSAVSTSS HGSYHEEFDA LGDVFLWGEA ISDGVLSGTG
0401: KTLHSTTEDA LLPKTLESTI VLDAQNIACG RCHAVLVTKQ GEIFSWGEGT GGKLGHGLEK DTHQPKFISS VRGMNFKSLA CGEFHTCAVT QSGDLYTWGD
0501: GTRNVDLLGH GSESSCWIPK RVTGVLQGMH VSYVACGPWH TAVVASSGQL FTFGDGCFGA LGHGDRTSSS VPRVVESLSE VRVMKVACGF WHTAAVVEVT
0601: NEASDAELYS SCGQLFTWGD GEKGQLGHGD NSAKLLPECV TSLTDENICQ VACGHSLTVS LTSNGHVYTM GSPAYGQLGN PTAKEKVPSR VEGDIAETCV
0701: EEIACGSHHV AVLTSKSEVY TWGKGLNGQL GHGTVENKRE PAVVGFLKEK QVKAITCGSN FTAVICLNKW VPGSEHSLCA GCRNPFNFRR KRHNCYNCGL
0801: IFCKVCSSRK SLRAALAPDM NKPYRVCYGC FTKLKRSREL SPPPPTPRTR NLLNMRKSTD VSEKTPKLLS PHSRIASADS LVQYGEGRHS KRDVKPEVSN
0901: SNVFALGSVQ PAMSPLLRGS IAWPRISKNM IVKVPGSRVS SRTASPVSVK STSPRPSHEV TTDESKHIKD SFGQEIVGLK EHVEQLTSKT QQLEEELEKT
1001: KRQLKVVTAM AADEAEENRS AKEVIRSLTT QLKEMSGRVP QKDDTSTNLR HTEKETTLES QTQTSSQTHI RSMVPHDSQS ENNLSKSFVN GHRRHNEKAE
1101: RVVQDEPGVY LTLLSLPGGG NELKRVRFSR KQFTEEQAEK WWGENGGKAC ERHNILVS

Best Arabidopsis Sequence Match ( AT1G69710.1 )
(BLAST)

0001: MCILELRLFA AASMADSLRT SFSERDVEQA ITSLKKGSYL LKYGRRGKPK FCPFQLTSDE SALVWYSGKE EKQIKLSQVL RIVPGQRTPT FKRYPRPEKE
0101: YQSFSLICPD RSLDLICKDK DEAEVWVVGL KSLITRVKVS KWKTTIKPEI TSAECPTPHA RRVSPFVTIL DQVIQPSNET STQTRLGKVF SDIVAITAPP
0201: SNNNQTEASG NLFCPFSPTP ANVENSNLRF STNDPFRLSL SSAVSTSSHG SYHEDFDALG DVFVWGESIS DGVLSGTGNS LNSTTEDALL PKALESTIVL
0301: DAQNIACGKC HAVLVTKQGE IFSWGEGKGG KLGHGLETDA QKPKFISSVR GLGFKSLACG DFHTCAITQS GDLYSWGDGT HNVDLLGHGN ESSCWIPKRV
0401: TGDLQGLYVS DVACGPWHTA VVASSGQLFT FGDGTFGALG HGDRRSTSVP REVESLIGLI VTKVACGVWH TAAVVEVTNE ASEAEVDSSR GQVFTWGDGE
0501: KGQLGHGDND TKLLPECVIS LTNENICQVA CGHSLTVSRT SRGHVYTMGS TAYGQLGNPT AKGNFPERVE GDIVEASVEE IACGSYHVAV LTSKSEIYTW
0601: GKGLNGQLGH GNVENKREPA VVGFLREKQV KAITCGSNFT AVICVHKWVP GSEHSLCAGC RNPFNFRRKR HNCYNCGLVF CKVCSSRKSL RAALAPDMNK
0701: PYRVCYGCFT KLKKSRESSP STPTSRTRKL LNMRKSTDVS ERDSLTQKFL SVNARLSSAD SSLHYSERRH HRRDLKPEVN NSNVFPSMNG SLQPVGSPFS
0801: KGSTALPKIP KNMMVKIPGS GMSSRTTSPV SVKSTSPRRS YEVAAAESKQ LKDSFNQDMA GLKEQVEQLA SKAHQLEEEL EKTKRQLKVV TAMAADEAEE
0901: NRSAKEVIRS LTTQLKEMAE KQSQKDSIST NSKHTDKEKS ETVTQTSNQT HIRSMVSQDS QNENNLTSKS FANGHRKQND KPEKVVQDEP GVYLTLLSLP
1001: GGGTELKRVR FSRKQFTEEQ AEKWWGENGA KVCERHNILV S

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4I287]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.