Factsheet for Bra004074.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 2
plastid 4
cytosol 2
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY56518	Canola	cytosol, plastid	100.0	99.81
Bra004253.1-P	Field mustard	plastid	84.59	84.75
Bra025182.1-P	Field mustard	cytosol	64.16	62.95
Bra017335.1-P	Field mustard	cytosol	64.16	62.71
Bra036349.1-P	Field mustard	cytosol, plastid	62.62	59.2
Bra027244.1-P	Field mustard	cytosol	25.43	26.94
Bra008654.1-P	Field mustard	cytosol	18.69	24.43
Bra021435.1-P	Field mustard	cytosol	18.3	24.23
Bra024242.1-P	Field mustard	cytosol	18.88	23.84
Bra029198.1-P	Field mustard	cytosol	18.88	23.79
Bra037755.1-P	Field mustard	cytosol	18.88	23.56
Bra016304.1-P	Field mustard	cytosol	15.22	21.41
Bra024664.1-P	Field mustard	cytosol	14.64	21.17
Bra039169.1-P	Field mustard	cytosol	18.88	20.81
Bra028647.1-P	Field mustard	mitochondrion	16.96	20.14
Bra013002.1-P	Field mustard	mitochondrion	14.07	16.48
Bra021109.1-P	Field mustard	endoplasmic reticulum, extracellular	24.66	15.57
Bra016214.1-P	Field mustard	cytosol	25.63	12.67
Bra019511.1-P	Field mustard	cytosol	23.12	12.54
Bra038181.1-P	Field mustard	cytosol	23.12	11.98
Bra003698.1-P	Field mustard	mitochondrion	24.66	11.88
Bra015708.1-P	Field mustard	cytosol	24.47	11.82
Bra008895.1-P	Field mustard	nucleus	23.89	11.65
Bra006504.1-P	Field mustard	cytosol	24.66	11.6
Bra023374.1-P	Field mustard	nucleus	24.08	11.24
Bra002235.1-P	Field mustard	nucleus	23.89	11.13
Bra023740.1-P	Field mustard	cytosol	22.74	11.07
Bra007876.1-P	Field mustard	cytosol, nucleus, plasma membrane	23.7	10.62
Bra014931.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	22.35	9.13

Protein Annotations

EnsemblPlants:Bra004074.1	EnsemblPlants:Bra004074.1-P	EnsemblPlantsGene:Bra004074	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091
InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF24	PFAM:PF00415	PFscan:PS50012
PRINTS:PR00633	ScanProsite:PS00626	SEG:seg	SUPFAM:SSF50985	UniParc:UPI000254137A	UniProt:M4CIP0
MapMan:35.1	:	:	:	:	:

Description

AT3G26100 (E=8e-168) | regulator of chromosome condensation (RCC1) family protein

Coordinates

chrA07:-:16682775..16684895

Molecular Weight (calculated)

55903.1 Da

IEP (calculated)

6.571

GRAVY (calculated)

-0.035

Length

519 amino acids

Sequence
(BLAST)

001: MDTTITTATS NGVSPAATLQ LHSIIPENPT IAMELPSFVS LKRQFLGNSA PGDFFLASCP SIALHATCSF FRKPANFSPD LELSISEVAA LDICQKRAIF
101: KRMGEEERQE IKRKCGGSWK LVLKFLLAGE FGYRREKSQA LAGPGHSIAV TSKGVVYSFG SNGSGQLGHG TVEDTWQPQP IRSLNGIRII QAALGADRTM
201: LISDAGEVYA FGKDCFSDPG LEIQQTKVIT TPQRVKSLTE IFVVQAAIGY HFTAILSREG RVYTLSWGKD EKLGHGTDLN CLLPQPLLGD LENVPVVQIS
301: AGFCYLLALA FHPTGMSVYS VGCGLGGKLG HGSTISEKQP RLIEEFSLLK MEPVMISAGA WHAAVVGRDG RVCTWGWGRY GCLGHGTEEL EMAPKVVEGL
401: KDVKAVHVAA GEYTTFVVSD DGQVYSFGYG EVNLGQGDVE ENTLTPKLVS SLKETKERVV HVSLTKSVSF PWTGHTFAMT ESGTLYAFGS GGRGQLGVKL
501: GDNIMEREEP AKVIGIDLS

Best Arabidopsis Sequence Match ( AT3G26100.2 )
(BLAST)

001: MDATSGTPSL QYINLPEQSV STTSPPVSPF QRPKRHCFGD TTPGEFPLAA NPSIVLHVLT ECRLDPRDLA NLEATCSFFS QPANFAPDIN LSLSELAALD
101: MCNKRVIFKP MNEEERQEMK RRCGGSWKLV LRFLLAGEAC CRREKSQAVA GPGHSVAVTS KGEVYTFGYN NSGQLGHGHT EDEARIQPVR SLQGVRIIQA
201: AAGAARTMLI SDDGKVYACG KESFGEAEYG GQGTKPVTTP QLVTSLKNIF VVQAAIGNYF TAVLSREGKV YTFSWGNDGR LGHQTEAADV EPRPLLGPLE
301: NVPVVQIAAG YCYLLALACQ PNGMSVYSVG CGLGGKLGHG SRTDEKYPRV IEQFQILNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES
401: VPKVVEGLSH VKAVHVATGD YTTFVVSDDG DVYSFGCGES ASLGHHPSFD EQGNRHANVL SPTVVTSLKQ VNERMVQISL TNSIYWNAHT FALTESGKLF
501: AFGAGDQGQL GTELGKNQKE RCVPEKVDID LS

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU80]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.