Factsheet for Bra019511.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21795	Canola	cytosol	99.37	99.37
AT3G47660.4	Thale cress	cytosol	80.15	77.47
VIT_17s0000g05980.t01	Wine grape	endoplasmic reticulum	32.39	44.86
Solyc03g116360.1.1	Tomato	cytosol	40.44	40.91
Bra008895.1-P	Field mustard	nucleus	44.62	40.13
Bra006504.1-P	Field mustard	cytosol	45.04	39.08
GSMUA_Achr4P00510_001	Banana	cytosol	39.08	38.92
Bra023374.1-P	Field mustard	nucleus	44.51	38.31
TraesCS7A01G185400.1	Wheat	cytosol	40.23	38.04
TraesCS7B01G090600.1	Wheat	cytosol	40.44	37.94
TraesCS7D01G187100.3	Wheat	cytosol	40.23	37.71
Bra002235.1-P	Field mustard	nucleus	43.05	36.98
Bra015708.1-P	Field mustard	cytosol	40.44	36.03
Bra003698.1-P	Field mustard	mitochondrion	40.33	35.84
Bra016214.1-P	Field mustard	cytosol	39.29	35.81
HORVU7Hr1G038070.12	Barley	cytosol	35.01	35.52
Bra007876.1-P	Field mustard	cytosol, nucleus, plasma membrane	42.22	34.89
Bra024242.1-P	Field mustard	cytosol	14.21	33.09
PGSC0003DMT400001620	Potato	cytosol	13.79	33.0
Bra023740.1-P	Field mustard	cytosol	36.05	32.36
Bra029198.1-P	Field mustard	cytosol	13.58	31.55
Bra037755.1-P	Field mustard	cytosol	13.58	31.25
Bra016304.1-P	Field mustard	cytosol	11.91	30.89
Bra038181.1-P	Field mustard	cytosol	31.03	29.64
Bra024664.1-P	Field mustard	cytosol	10.14	27.02
GSMUA_Achr7P20980_001	Banana	cytosol	39.71	26.15
Bra014931.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	34.38	25.91
Bra028647.1-P	Field mustard	mitochondrion	11.81	25.86
Bra013002.1-P	Field mustard	mitochondrion	11.81	25.51
Bra039169.1-P	Field mustard	cytosol	12.43	25.27
Bra008654.1-P	Field mustard	cytosol	10.34	24.94
Bra004253.1-P	Field mustard	plastid	12.85	23.75
Bra017335.1-P	Field mustard	cytosol	13.06	23.54
Bra021435.1-P	Field mustard	cytosol	9.61	23.47
Bra025182.1-P	Field mustard	cytosol	12.96	23.44
Bra027244.1-P	Field mustard	cytosol	11.91	23.27
Bra004074.1-P	Field mustard	cytosol, plastid	12.54	23.12
Bra036349.1-P	Field mustard	cytosol, plastid	12.43	21.68
Bra021109.1-P	Field mustard	endoplasmic reticulum, extracellular	11.6	13.5

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	EnsemblPlantsGene:Bra019511	EnsemblPlants:Bra019511.1
EnsemblPlants:Bra019511.1-P	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000408
InterPro:IPR009091	InterPro:IPR011993	InterPro:IPR013083	InterPro:IPR017455	UniProt:M4DSL8	PFAM:PF00415
PFAM:PF01363	InterPro:PH-like_dom_sf	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50178
PANTHER:PTHR22870	PANTHER:PTHR22870:SF244	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729
SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI000253F082	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

AT3G47660 (E=0.0) | Ran GTPase binding / chromatin binding / zinc ion binding

Coordinates

chrA06:-:12693424..12696879

Molecular Weight (calculated)

103858.0 Da

IEP (calculated)

8.405

GRAVY (calculated)

-0.372

Length

957 amino acids

Sequence
(BLAST)

001: MACSQRSLPT DRENEQAIAI LKKGAYLLKY GRRGKPKFYP FRLSSDEIFL LWYCGKTEKR LKLSSVTRII PGQRTSVFRR YPQPTKEYQS FSLIYGDRSL
101: DLVCKDKDEA EFWITTLRAL LSRNCSSSLV LHSRSRSFVP DYGGEQSSSN NNSLSNIRSV SSDTSCEEHA KKASGSHINT PQRLGKVFSE VLSQTAVLRA
201: LALDELVHKP HNTSPETLEN RPTNNHSPAV DTSKYTVSSA LSSSSQGSTF EDLKSLCDVF VWGESIGDGL LLGCGGGGAM HKSESSSSLT AAETFLPKVL
301: KSHVALDAQS ISCGTNYAVL VTKQGQMYSW GEESGGRLGH GVCSYVPQPK LIDEFDGSAV ELADCGDFHT CAVTSSGDLY TWGDGAHNAG LLGLGSEASH
401: WKPVRVLGQM EGINVKTISC GPWHTAFVTS EGKLFTYGDG TFGALGHGDR VSTSVPREAE ALSGCRTIKI ACGVWHSAAV VSVFGEAASS GKLFTWGDGE
501: DGKLGHGDKE SRLIPSCVAE LNATSFQQVA CGQSVTVALS ASGQVYAMGV LDPVHENVVR APSCIEGGLG KSCVQEVACG FHHIAVLNSK AEVYTWGRGS
601: NGQLGHGDTE NRRLPTLVRA LKGKQVRKVV CGSNYTATIC LHKPITGTDS SRCSGCRHPF NYMRKLHNCY NCGSVFCNAC TSKKSLAAAM APKTNRPYRV
701: CDDCYIKLEG VREYLGTPAN NSARFSNASL QSSINEMDDF GTTPQRQLLR VDSFDFFRQS KIPDLKTIGE TSGGSHASSS SGFNLKGIRQ LSRLASFDSV
801: NQEGKQRTKH CASKSDTSSL VRHSVTCGLP FSRRGSVELF PLSIKSSPVE SVGNTSDFTA DITDTEFLQE GTKKPNQCLN QEISVLKAQV EELTRKTKQL
901: EAELGTTSKK LEVAVLMQRD DAEKIKTSEE IVRSLTLQLM DATKKGVDKT RRRRSSF

Best Arabidopsis Sequence Match ( AT3G47660.2 )
(BLAST)

001: MACFQRSVPT DRENEQAIAI LKKGAYLLKY GRRGKPKFYP FRLSSDEIYL LWYCGKKEKR LKLSSVTRII PGQRTAVFRR YPQPTKEYQS FSLIYGERSL
101: DLVCKDKDEA EFWLTTLRAL LSRNNSSALV LHSRSRSLAP ENGEQSSSSQ NSKSNIRSVS SDTSYEEHAK KASGSHCNTP QRLGKVFSEV LSQTAVLKAL
201: SLDELVHKPH TSPPETIENR PTNHSSPGVD TSKYSISSAV SSSSQGSTFE DLKSLCDVFV WGESIGDGLL GGGMHKSGSS SSLMTDSFLP KVLKSHVALD
301: AQSISCGTNY AVLVTKQGQM YSWGEESGGR LGHGVCSYVP HPKLIDEFNG STVELADCGE FHTCAVTASG DLYAWGDGDH NAGLLGLGSG ASHWKPVRIL
401: GQMEGIYVKA ISCGPWHTAF VTSEGKLFTF GDGTFGALGH GDRISTNIPR EVEALNGCRT IKAACGVWHS AAVVSVFGEA TSSGKLFTWG DGDDGRLGHG
501: DIECRLIPSC VTELDTTSFQ QVACGQSITV ALSMSGQVYA MGTADPSHDI VRAPSCIEGG LGKSFVQEVA CGFHHIAVLN SKAEVYTWGK GSNGQLGHGD
601: TEYRCMPTLV KALKGKQVRK VVCGSNYTAT ICLHKPITGT DSTKCSGCRH PFNYMRKLHN CYNCGSVFCN SCTSKKSLAA AMAPKTNRPY RVCDDCYIKL
701: EGIRESLATP ANSARFSNAS LPSSYEMDEI GITPQRQLLR VDSFDFFRQT KHADLKTIGE TSGGSCTSSI HSNMDIKGSF NLKGIRRLSR LTSFDSVQEE
801: GKQRTKHCAS KSDTSSLIRH SVTCGLPFSR RGSVELFPLS IKSSPVESVA TTSDFTTDIT DHELLQEVPK KSNQCLSHEI SVLKAQVEEL TLKSKKLETE
901: LGKTSKKLEV AVLMARDDAE KIKSSEEIVR SLTLQLMNTT KKEVDKTRRH RNSF

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLL5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.