Factsheet for Bra003698.1-P

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX68076	Canola	cytosol	75.02	97.35
AT1G76950.1	Thale cress	cytosol	92.85	90.66
Bra015708.1-P	Field mustard	cytosol	87.93	88.17
KRH08750	Soybean	cytosol	44.01	74.41
VIT_18s0166g00210.t01	Wine grape	cytosol	71.59	68.29
PGSC0003DMT400002081	Potato	cytosol	71.22	68.12
KRH70333	Soybean	cytosol	70.66	67.95
KRG91629	Soybean	cytosol	69.27	67.94
KRH35179	Soybean	cytosol	70.57	67.86
Solyc04g071040.2.1	Tomato	cytosol	70.94	67.85
KRH30228	Soybean	cytosol	25.35	67.08
Bra016214.1-P	Field mustard	cytosol	64.44	66.1
KRH08736	Soybean	endoplasmic reticulum	41.88	64.71
Os01t0964800-01	Rice	mitochondrion	34.35	63.9
GSMUA_Achr2P20470_001	Banana	endoplasmic reticulum, plasma membrane	54.87	59.88
TraesCS1A01G020400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	49.95	59.32
KXG34192	Sorghum	cytosol	49.95	58.99
HORVU1Hr1G002740.1	Barley	cytosol, mitochondrion, nucleus, plastid	49.67	58.99
Zm00001d011805_P001	Maize	cytosol	49.86	58.88
TraesCS1B01G024400.1	Wheat	cytosol, mitochondrion, nucleus	49.58	58.88
TraesCS1D01G019900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	49.67	58.86
KRH30227	Soybean	cytosol	24.42	58.31
HORVU3Hr1G112690.2	Barley	cytosol, plastid	49.03	58.15
GSMUA_Achr8P07850_001	Banana	cytosol	59.05	57.56
TraesCS3A01G512900.1	Wheat	cytosol	48.65	57.52
Zm00001d035723_P001	Maize	cytosol, mitochondrion, nucleus, plastid	48.84	57.36
EES18851	Sorghum	cytosol, plastid	48.75	57.31
TraesCS3D01G522600.2	Wheat	cytosol	46.15	57.19
TraesCS3B01G581600.2	Wheat	cytosol	48.38	57.13
Zm00001d006773_P001	Maize	cytosol	21.36	57.07
Os05t0106700-00	Rice	mitochondrion	49.12	56.28
GSMUA_Achr6P13030_001	Banana	endoplasmic reticulum	51.07	56.18
EES13137	Sorghum	cytosol	54.87	55.55
Os04t0686200-01	Rice	plasma membrane	54.41	55.44
HORVU3Hr1G108180.1	Barley	mitochondrion	8.36	53.89
TraesCS2D01G589800.1	Wheat	cytosol	53.48	53.83
HORVU2Hr1G124270.22	Barley	cytosol, mitochondrion, nucleus	53.76	53.81
TraesCS2B01G609200.1	Wheat	cytosol	53.39	53.74
TraesCS2A01G581400.1	Wheat	cytosol	53.39	53.74
Zm00001d002876_P001	Maize	mitochondrion	53.76	53.27
GSMUA_AchrUn_...	Banana	nucleus	56.92	53.17
Bra008895.1-P	Field mustard	nucleus	49.03	49.62
Bra023740.1-P	Field mustard	cytosol	49.03	49.53
Bra006504.1-P	Field mustard	cytosol	49.77	48.59
Bra023374.1-P	Field mustard	nucleus	49.21	47.66
Bra002235.1-P	Field mustard	nucleus	49.21	47.58
Bra019511.1-P	Field mustard	cytosol	35.84	40.33
Bra014931.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	46.98	39.84
Bra007876.1-P	Field mustard	cytosol, nucleus, plasma membrane	40.67	37.82
Bra038181.1-P	Field mustard	cytosol	34.73	37.33
Bra024242.1-P	Field mustard	cytosol	12.91	33.82
Bra029198.1-P	Field mustard	cytosol	12.72	33.25
Bra037755.1-P	Field mustard	cytosol	12.63	32.69
Bra016304.1-P	Field mustard	cytosol	10.59	30.89
Bra008654.1-P	Field mustard	cytosol	10.59	28.72
Bra024664.1-P	Field mustard	cytosol	9.38	28.13
Bra021435.1-P	Field mustard	cytosol	10.03	27.55
Bra028647.1-P	Field mustard	mitochondrion	11.14	27.46
Bra039169.1-P	Field mustard	cytosol	11.7	26.75
Bra027244.1-P	Field mustard	cytosol	12.07	26.53
Bra013002.1-P	Field mustard	mitochondrion	10.77	26.19
Bra004253.1-P	Field mustard	plastid	12.07	25.1
Bra004074.1-P	Field mustard	cytosol, plastid	11.88	24.66
Bra017335.1-P	Field mustard	cytosol	12.07	24.48
Bra025182.1-P	Field mustard	cytosol	11.42	23.25
Bra036349.1-P	Field mustard	cytosol, plastid	11.14	21.86
Bra021109.1-P	Field mustard	endoplasmic reticulum, extracellular	11.7	15.33

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	InterPro:BRX_N	EnsemblPlantsGene:Bra003698
EnsemblPlants:Bra003698.1	EnsemblPlants:Bra003698.1-P	InterPro:Brevis_radix_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR000408	InterPro:IPR001849	InterPro:IPR009091	InterPro:IPR011993	InterPro:IPR013083
InterPro:IPR013591	InterPro:IPR017455	UniProt:M4CHL5	PFAM:PF00415	PFAM:PF01363	PFAM:PF08381
PFAM:PF13713	PFAM:PF16457	InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00633	ScanProsite:PS00626
PFscan:PS50012	PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF91	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI0002541546
InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

AT1G76950 (E=0.0) PRAF1 | PRAF1; Ran GTPase binding / chromatin binding / zinc ion binding

Coordinates

chrA07:-:14557384..14561553

Molecular Weight (calculated)

117743.0 Da

IEP (calculated)

8.527

GRAVY (calculated)

-0.480

Length

1077 amino acids

Sequence
(BLAST)

0001: MRFFPIWQAL NTLKKGTQLL KYGRKGKPKF YPFRLSSDEK SLIWISSSGE KRLKLASVSK IVPGQRTAVF QRYLRPEKDY LSFSLLYNGK KKSLDLICKD
0101: KVEAEVWIGG LKTLISGGQG GRSKIDGWSG GNISVDASRD VTSSSQSSSS ASASQGHSSP GTPFNFDPIP SPKSTEPEQS HVALDTKNMQ TKVSGSDGFR
0201: VSVSSAQSSS SHGSGADDSD ALGDVYIWGE VICDNVVKIG IDKNASYLTT RTDVLVPKPL ESNIVLDVHQ IACGVRHASF VTRQGEVFTW GEESGGRLGH
0301: GIGKDVFHPR LVESLTSCDF VACGEFHTCA VTLSGELYTW GDGTHNVGLL GHGSDVSHWI PKRIAGPLEG LHVASVTCGP WHTALVTSHG RLFTFGDGTF
0401: GVLGHGDKET VQYPREVESL SGLRTIAVSC GVWHTAAVVE IIVTQSNSSS VSSGKLFTWG DGDKNRLGHG DKDPRLKPTC VPALIDYNFH KIACGHSLTV
0501: GLTTSGQVFT MGSTVYGQLG NVQTDGKLPC LVEDKLASEF VEEISCGAYH VAALTSRNEV YTWGKGANGR LGHGDLEDRK VPTLVEALRD RHVKYVACGS
0601: NYTAAICLHK WVSGAEQSQC SSCRLAFGFT RKRHNCYNCG LVHCHSCSSK KAFRAALAPS AGRLYRVCDS CYVKLSKVSE ISETTSRRNS VVPRLSGENK
0701: DRLDKSEIRL AKFGASNMDL IKQLDSKAAK QGKKSDNFAL GRNSQLPSLM QLKDAVQSNI GRSTPKLVQA PSGINSRSVS PFSRRSSPPR SATPMPSTSG
0801: IYFPVGVADN MKKTNEILNQ EIIKLRTQVD SLTQKCELQE VELKNSVKKT QEALALAEEE SAKSRAAKEA IKSLIAQLKD VAEKLPPGES IKLGLDQNGF
0901: HFPEENGFHS SRSESMTSSI SSVAPFDFTF ANASWSNLQS PKHTPRAGER NNNNNNTAYP SDPRLSSSGS VISERHEPFQ FHNNGSSQTG AENNTDQVEA
1001: EWIEQYEPGV YITLVALHDG TRDLRRVRFS RRRFGEHQAE TWWSENREKV YEKYNVRVSE KPTASQTDRD EEEDVTQ

Best Arabidopsis Sequence Match ( AT1G76950.1 )
(BLAST)

0001: MADLVTYSNA DHNLEQALIT LKKGTQLLKY GRKGKPKFYP FRLSSDEKSL IWISSSGEKR LKLASVSKIV PGQRTAVFQR YLRPEKDYLS FSLLYNGKKK
0101: SLDLICKDKV EAEIWIGGLK TLISTGQGGR SKIDGWSGGG LSVDASRELT SSSPSSSSAS ASRGHSSPGT PFNIDPITSP KSAEPEVPPT DSEKSHVALD
0201: NKNMQTKVSG SDGFRVSVSS AQSSSSHGSA ADDSDALGDV YIWGEVICDN VVKVGIDKNA SYLTTRTDVL VPKPLESNIV LDVHQIACGV RHAAFVTRQG
0301: EIFTWGEESG GRLGHGIGKD VFHPRLVESL TATSSVDFVA CGEFHTCAVT LAGELYTWGD GTHNVGLLGH GSDISHWIPK RIAGSLEGLH VASVSCGPWH
0401: TALITSYGRL FTFGDGTFGV LGHGDKETVQ YPREVESLSG LRTIAVSCGV WHTAAVVEII VTQSNSSSVS SGKLFTWGDG DKNRLGHGDK DPRLKPTCVP
0501: ALIDYNFHKI ACGHSLTVGL TTSGQVFTMG STVYGQLGNL QTDGKLPCLV EDKLASEFVE EISCGAYHVA ALTSRNEVYT WGKGANGRLG HGDLEDRKVP
0601: TIVEALKDRH VKYIACGSNY TAAICLHKWV SGAEQSQCST CRLAFGFTRK RHNCYNCGLV HCHSCSSKKA FRAALAPSAG RLYRVCDSCY VKLSKVSEIN
0701: DTNRRNSAVP RLSGENRDRL DKSEIRLAKF GTSNMDLIKQ LDSKAAKQGK KTDTFSLGRN SQLPSLLQLK DAVQSNIGDM RRATPKLAQA PSGISSRSVS
0801: PFSRRSSPPR SATPMPSTSG LYFPVGIADN MKKTNEILNQ EIVKLRTQVD SLTQKCEFQE VELQNSVKKT QEALALAEEE SAKSRAAKEA IKSLIAQLKD
0901: VAEKLPPGES VKLACLQNGL DQNGFHFPEE NGFHPSRSES MTSSISSVAP FDFAFANASW SNLQSPKQTP RASERNSNAY PADPRLSSSG SVISERIEPF
1001: QFQNNSDNGS SQTGVNNTNQ VEAEWIEQYE PGVYITLVAL HDGTRDLRRV RFSRRRFGEH QAETWWSENR EKVYEKYNVR VSEKSTASQT HRDRDEEEED
1101: IPH

Arabidopsis Description

PRAF1PH, RCC1 and FYVE domains-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q947D2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.