CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011805_P001	Maize	cytosol	96.27	96.27
Zm00001d006773_P001	Maize	cytosol	38.38	86.85
HORVU3Hr1G112690.2	Barley	cytosol, plastid	82.35	82.71
TraesCS3A01G512900.1	Wheat	cytosol	82.46	82.55
TraesCS3D01G522600.2	Wheat	cytosol	78.18	82.05
TraesCS3B01G581600.2	Wheat	cytosol	81.91	81.91
EES18851	Sorghum	cytosol, plastid	77.85	77.51
Os01t0964800-01	Rice	mitochondrion	48.9	77.03
KRH08736	Soybean	endoplasmic reticulum	46.05	60.26
GSMUA_Achr6P13030_001	Banana	endoplasmic reticulum	60.75	56.59
CDY48550	Canola	cytosol	58.55	54.49
KRG91629	Soybean	cytosol	65.57	54.46
VIT_18s0166g00210.t01	Wine grape	cytosol	66.56	53.76
KRH35179	Soybean	cytosol	65.13	53.04
GSMUA_Achr2P20470_001	Banana	endoplasmic reticulum, plasma membrane	57.24	52.89
Solyc04g071040.2.1	Tomato	cytosol	65.13	52.75
PGSC0003DMT400002081	Potato	cytosol	65.13	52.75
KRH30227	Soybean	cytosol	25.88	52.33
AT5G42140.2	Thale cress	cytosol, endoplasmic reticulum, nucleus	60.53	51.21
KRH70333	Soybean	cytosol	62.83	51.16
CDY47138	Canola	cytosol	57.79	50.33
KRH08750	Soybean	cytosol	35.09	50.24
CDY11586	Canola	cytosol	57.89	50.14
AT1G76950.1	Thale cress	cytosol	60.53	50.05
Bra016214.1-P	Field mustard	cytosol	57.57	50.0
Bra003698.1-P	Field mustard	mitochondrion	58.99	49.95
CDX88324	Canola	cytosol	56.69	48.73
CDX87557	Canola	cytosol	57.24	48.65
Bra015708.1-P	Field mustard	cytosol	57.24	48.6
KXG34127	Sorghum	cytosol	48.46	47.94
EES13137	Sorghum	cytosol	55.37	47.46
KRH30228	Soybean	cytosol	21.05	47.17
CDX68076	Canola	cytosol	39.36	43.25
EES19890	Sorghum	cytosol	45.29	40.49
EES01332	Sorghum	cytosol	45.18	39.02
EES10837	Sorghum	cytosol	16.01	32.96
CDY70949	Canola	cytosol	11.62	29.94
KXG26989	Sorghum	cytosol	33.0	28.21
OQU85620	Sorghum	cytosol, mitochondrion, nucleus	33.0	28.05
KXG25196	Sorghum	cytosol	11.95	27.88
EER97183	Sorghum	mitochondrion	13.16	27.78
EES09892	Sorghum	mitochondrion	12.39	27.03
OQU87663	Sorghum	cytosol	11.95	26.98
OQU91404	Sorghum	cytosol	13.6	25.62
KXG35074	Sorghum	cytosol	13.27	25.05
EES07101	Sorghum	cytosol, plastid	10.96	18.69
KXG26580	Sorghum	cytosol	10.75	18.25
EES12399	Sorghum	cytosol, plastid	10.53	18.15

Protein Annotations

Gene3D:2.130.10.30	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A1B6Q8F4	InterPro:BRX_N	InterPro:Brevis_radix_dom
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000408	InterPro:IPR009091
InterPro:IPR013083	InterPro:IPR013591	InterPro:IPR017455	EnsemblPlants:KXG34192	ProteinID:KXG34192	ProteinID:KXG34192.1
PFAM:PF00415	PFAM:PF01363	PFAM:PF08381	PFAM:PF13713	PRINTS:PR00633	ScanProsite:PS00626
PFscan:PS50012	PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF199	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	SMART:SM00064	EnsemblPlantsGene:SORBI_3003G438900	SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI00081AC42B
InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

hypothetical protein

Coordinates

chr3:+:73869095..73874122

Molecular Weight (calculated)

98765.1 Da

IEP (calculated)

8.454

GRAVY (calculated)

-0.457

Length

912 amino acids

Sequence
(BLAST)

001: MHTKGASSDA IRVSTSSAPS TSSHGSAQDD YDSSGDVYVW GEVICDNTVR VGPDTVIRST GKADFLLPKP LESKLVLDVY HVDCGVKHAA LVTKNGEVFT
101: WGEESGGRLG HGSREDSVHP RLVESLAICN VDIVACGEFH TCAVTTAGEL YTWGDGTHNI GLLGNGTDVS HWIPKRISGA LEGHQVAYVS CGTWHTALVT
201: SRGQLFTFGD GTFGVLGHGN RESFSCPREV ESLSGLKTIA VACGVWHTAA VVEVIVTQSS SSMSSGKLFT WGDGDKHRLG HGDKEPRLKP TCVASLIDYD
301: FCRIACGHSL TVGLTTSGQI LSMGNTVYGQ LGNPRSDGKL PCLVEDIMGE HVVQVACGSY HVAVLTNKSE VFTWGKGANG RLGHGDIEDR KIPTLVEALR
401: DRGVRHIACG SNFTSAICQH KWVSGAEQSQ CASCRQPFGF TRKRHNCHNC GLVHCNACTS HKVLRAALAP NPAKPYRVCD SCFMKLNSAA YSSAVNKKKE
501: AVPRHSGESN NDAKLARAIV PSNLDMIRSL DSKAAKQGKK TDALSFLRTP QMSSLLQLKD IALSGGIDMN KSVPRAVRTS VRSLNSSRAV SPFSRKPSPP
601: RSTTPVPTTH GLSIAKTAAD SLAKTNEMLS QEVERLRAQV DNLRHRCELQ ELELQKSAKK VQEAMSMVSE ESAKSKAAKE VIKSLTAQLK DMAERLPPDQ
701: GAYDGSEAKQ AHVPNGIEMY ASIYTGMNGI HQPRNESISA VSTPSLNIGR SLHPNGISNQ HKSPGSISEN SEVSVHTHRV SGPPEAENPN RRGHSSSDEM
801: LSASSRADDS SSKDARSLFS GEDGYKSRSA VSLPSNQVQA EWIEQYEPGV YITLTTLRDG TRDLKRVRFS RRRFGEHQAE SWWNENRDKV YEKYNVRSSE
901: RVSSASSIRS AR

Best Arabidopsis Sequence Match ( AT5G42140.1 )
(BLAST)

0001: MADLVSYGNV VRDIEQALIA LKKGAQLLKY GRKGKPKFCP FRLSNDETSL IWISNGGEKR LKLATVSKIV PGQRTAVFQR YLRPDKDYLS FSLIYSNRKR
0101: TLDLICKDKV EAEVWIAGLK ALISGQAGRS KIDGWSDGGL SIADSRDLTL SSPTNSSVCA SRDFNIADSP YNSTNFPRTS RTENSVSSER SHVASDSPNM
0201: LVRGTGSDAF RVSVSSVQSS SSHGSAPDDC DALGDVYIWG EVLCENVTKF GADKNIGYLG SRSDVLIPKP LESNVVLDVH HIACGVKHAA LVSRQGEVFT
0301: WGEASGGRLG HGMGKDVTGP QLIESLAATS IDFVACGEFH TCAVTMTGEI YTWGDGTHNA GLLGHGTDVS HWIPKRISGP LEGLQIASVS CGPWHTALIT
0401: STGQLFTFGD GTFGVLGHGD KETVFYPREV ESLSGLRTIA VACGVWHAAA IVEVIVTHSS SSVSSGKLFT WGDGDKSRLG HGDKEPRLKP TCVSALIDHT
0501: FHRVACGHSL TVGLTTSGKV YTMGSTVYGQ LGNPNADGKL PCLVEDKLTK DCVEEIACGA YHVAVLTSRN EVFTWGKGAN GRLGHGDVED RKAPTLVDAL
0601: KERHVKNIAC GSNFTAAICL HKWVSGTEQS QCSACRQAFG FTRKRHNCYN CGLVHCHSCS SKKSLKAALA PNPGKPYRVC DSCHSKLSKV SEANIDSRKN
0701: VMPRLSGENK DRLDKTEIRL AKSGIPSNID LIKQLDNRAA RQGKKADTFS LVRTSQTPLT QLKDALTNVA DLRRGPPKPA VTPSSSRPVS PFSRRSSPPR
0801: SVTPIPLNVG LGFSTSIAES LKKTNELLNQ EVVRLRAQAE SLRHRCEVQE FEVQKSVKKV QEAMSLAAEE SAKSEAAKEV IKSLTAQVKD IAALLPPGAY
0901: EAETTRTANL LNGFEQNGFH FTNANGQRQS RSDSMSDTSL ASPLAMPARS MNGLWRNSQS PRNTDASMGE LLSEGVRISN GFSEDGRNSR SSAASASNAS
1001: QVEAEWIEQY EPGVYITLLA LGDGTRDLKR VRFSRRRFRE QQAETWWSEN RERVYEKYNI RGTDRSSVAT SPISQSQF

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain [Source:TAIR;Acc:AT5G42140]
SUBAcon: [endoplasmic reticulum,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.