CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES12399	Sorghum	cytosol, plastid	76.91	78.07
HORVU2Hr1G083590.1	Barley	cytosol	53.45	63.78
TraesCS2D01G340500.1	Wheat	cytosol	51.58	63.24
TraesCS2B01G360200.1	Wheat	cytosol	60.34	59.56
EES07101	Sorghum	cytosol, plastid	54.75	54.95
GSMUA_AchrUn_...	Banana	cytosol	47.3	47.65
KXG35074	Sorghum	cytosol	22.16	24.64
KXG25196	Sorghum	cytosol	16.39	22.51
EES10837	Sorghum	cytosol	18.06	21.9
EES09892	Sorghum	mitochondrion	16.76	21.53
EER97183	Sorghum	mitochondrion	16.2	20.14
OQU91404	Sorghum	cytosol	18.06	20.04
OQU87663	Sorghum	cytosol	13.97	18.56
EES13137	Sorghum	cytosol	22.35	11.28
EES19890	Sorghum	cytosol	21.42	11.27
EES18851	Sorghum	cytosol, plastid	19.18	11.24
KXG26989	Sorghum	cytosol	22.16	11.15
EES01332	Sorghum	cytosol	21.42	10.89
KXG34127	Sorghum	cytosol	18.62	10.85
KXG34192	Sorghum	cytosol	18.25	10.75
OQU85620	Sorghum	cytosol, mitochondrion, nucleus	20.67	10.34

Protein Annotations

EnsemblPlants:KXG26580	EnsemblPlantsGene:SORBI_3006G124500	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF198	PFAM:PF00415	PFscan:PS50012	PRINTS:PR00633
ProteinID:KXG26580	ProteinID:KXG26580.1	ProteinID:OQU81815.1	ProteinID:OQU81816.1	ProteinID:OQU81817.1	SEG:seg
SUPFAM:SSF50985	UniParc:UPI00081ADEF3	UniProt:A0A1B6PLN9	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr6:-:49022670..49026371

Molecular Weight (calculated)

58157.2 Da

IEP (calculated)

7.162

GRAVY (calculated)

-0.174

Length

537 amino acids

Sequence
(BLAST)

001: MDATESKASV VIKFHNIVNE TTSHFCPSLQ QIPLTANPSI LLHVLSSYGL EPKDLAALEA TCKFFRSPAN FEPDGTLSLP DIAAYDTCCQ KDILKSMKNE
101: EKERLKQRCG GSWKLVLMYL LIGEKNYHRG KSQVVAGPEH SIVVTAKGDV YSFGANSSGQ LGLGNTEGQC KPCLIRSLQG IRITQAAVGS RRTMLVSDTG
201: SVYVFGQDSF AGLESAGSYT SSPKVVESLK GIFVVQASVG GYFSAVLSRE GQVYTFCWGR DARLGHRSNP TDLEPRLLSG PLEHALVVQI AAGNCYLLML
301: AYQPTGMSVY SIGCGEGGKL GHGCEEKLRI PRMIKHFQTL KAKPVSVSAG AFHCAVLASD GRVFTWGRNP NGCLGHDDRQ HYTIFPTAVA SLARVKARYV
401: SAGFRSTFVV SDNGHVYSFG CDHSDNLGVE DDRIPNLVRL FQEDEDGVEV EDDADDGIPN LATRIVAVDG KVVQISATNT WDWVDNYKNK DGSHTLVLTE
501: SGRVYSLGVG SKGQLGMKLA EGQKTRPAPR CVDIDLA

Best Arabidopsis Sequence Match ( AT3G26100.2 )
(BLAST)

001: MDATSGTPSL QYINLPEQSV STTSPPVSPF QRPKRHCFGD TTPGEFPLAA NPSIVLHVLT ECRLDPRDLA NLEATCSFFS QPANFAPDIN LSLSELAALD
101: MCNKRVIFKP MNEEERQEMK RRCGGSWKLV LRFLLAGEAC CRREKSQAVA GPGHSVAVTS KGEVYTFGYN NSGQLGHGHT EDEARIQPVR SLQGVRIIQA
201: AAGAARTMLI SDDGKVYACG KESFGEAEYG GQGTKPVTTP QLVTSLKNIF VVQAAIGNYF TAVLSREGKV YTFSWGNDGR LGHQTEAADV EPRPLLGPLE
301: NVPVVQIAAG YCYLLALACQ PNGMSVYSVG CGLGGKLGHG SRTDEKYPRV IEQFQILNLQ PRVVAAGAWH AAVVGQDGRV CTWGWGRYGC LGHGNEECES
401: VPKVVEGLSH VKAVHVATGD YTTFVVSDDG DVYSFGCGES ASLGHHPSFD EQGNRHANVL SPTVVTSLKQ VNERMVQISL TNSIYWNAHT FALTESGKLF
501: AFGAGDQGQL GTELGKNQKE RCVPEKVDID LS

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family protein [Source:UniProtKB/TrEMBL;Acc:Q9LU80]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.