CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 7
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os11t0545800-01	Rice	mitochondrion	86.12	84.71
HORVU1Hr1G016430.4	Barley	cytosol	78.95	83.12
Zm00001d052624_P007	Maize	plastid	89.47	81.66
TraesCS1D01G078800.1	Wheat	mitochondrion	81.82	81.62
TraesCS1A01G076400.1	Wheat	mitochondrion	81.58	81.38
GSMUA_Achr10P...	Banana	mitochondrion	63.88	63.57
VIT_07s0031g02850.t01	Wine grape	mitochondrion	57.66	57.38
KRH63955	Soybean	mitochondrion	55.98	56.12
KRH53977	Soybean	cytosol, mitochondrion, nucleus	42.82	55.94
CDY44785	Canola	mitochondrion	57.42	55.43
Bra028647.1-P	Field mustard	mitochondrion	57.42	54.92
CDY40735	Canola	mitochondrion	57.42	54.92
AT5G08710.1	Thale cress	mitochondrion	56.94	54.84
Solyc05g056590.2.1	Tomato	cytosol	35.89	54.55
OQU87663	Sorghum	cytosol	25.36	26.24
KXG25196	Sorghum	cytosol	24.4	26.09
EES10837	Sorghum	cytosol	24.64	23.25
OQU91404	Sorghum	cytosol	24.88	21.49
EER97183	Sorghum	mitochondrion	20.1	19.44
KXG35074	Sorghum	cytosol	21.77	18.84
EES12399	Sorghum	cytosol, plastid	21.53	17.01
KXG26580	Sorghum	cytosol	21.53	16.76
EES07101	Sorghum	cytosol, plastid	21.05	16.45
KXG34127	Sorghum	cytosol	28.95	13.12
EES18851	Sorghum	cytosol, plastid	27.27	12.45
KXG34192	Sorghum	cytosol	27.03	12.39
EES19890	Sorghum	cytosol	28.95	11.86
EES01332	Sorghum	cytosol	29.43	11.65
EES13137	Sorghum	cytosol	27.27	10.71
KXG26989	Sorghum	cytosol	26.79	10.5
OQU85620	Sorghum	cytosol, mitochondrion, nucleus	25.36	9.88

Protein Annotations

EnsemblPlants:EES09892	EnsemblPlantsGene:SORBI_3005G143900	EntrezGene:8066052	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091
InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF245	PFAM:PF00415	PFscan:PS50012
PRINTS:PR00633	ProteinID:EES09892	ProteinID:EES09892.1	RefSeq:XP_002450904.1	ScanProsite:PS00626	SEG:seg
SUPFAM:SSF50985	unigene:Sbi.6791	UniParc:UPI0001A86818	UniProt:C5Y3W1	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr5:-:60829888..60835616

Molecular Weight (calculated)

44572.7 Da

IEP (calculated)

7.001

GRAVY (calculated)

-0.125

Length

418 amino acids

Sequence
(BLAST)

001: MWRATRRCPP LLRWFSSDAA ASKAAPRRQR VAALWGNGDY GRLGLGVLES RWSPTVCPFF LARAADPPAS LACGGAHTLF LTQSGRVFAT GLNDFGQLGV
101: GSSVTHTLEP VEVSGFHERV VEVSAGNHHS CAVTADGKLF VWGRNSGGQL GLGKGAGKVV STPTKVDCLT DFRIKMVALG SEHSIAVTEE GEVLSWGAAG
201: SGRLGHGRQS SILGFSLTTS EYTPRLIKNF DGIKIKKIAA GMLHSACIDE KGTLFIFGQK TEKGFGRSNE AFRPNIVEEI PFSEEVACGG YHTCVVTDSG
301: DLYSWGSNEN GCLGLGGTDM VCSPEILKSS LFKLPVSKVS CGWKHTAVIS GDDIYTWGWG GANGTFFEEG HSSGGQLGHG NDVDYFEPMM VPFGKNARAV
401: HVSCGFNHTG AIYEYSED

Best Arabidopsis Sequence Match ( AT5G08710.1 )
(BLAST)

001: MLTRAIGRVR IPVSRIQGSN CTSGLLKDSK LGPIGVCCSR WVSSESGKRF AAMWGSGDYG RLGLGNLDSQ WTPAVCSALS DHSITAVACG GAHTLFLTET
101: RRVFATGLND CGQLGVSDVK SHAMDPLEVS GLDKDILHIS AGYYHSAAIT VDGELYMWGK NSSGQLGLGK KAARVVRVPT KVEALHGITI QSVALGSEHS
201: VAVTDGGEVL SWGGGGSGRL GHGHQSSLFG ILRSNSEFTP RLIKELEGIK VTNVAAGLLH SACTDENGSA FMFGEKSINK MGFGGVRNAT TPSIISEVPY
301: AEEVACGGYH TCVVTRGGEL YTWGSNENGC LGTDSTYVSH SPVRVEGPFL ESTVSQVSCG WKHTAAISDN NVFTWGWGGS HGTFSVDGHS SGGQLGHGSD
401: VDYARPAMVD LGKNVRAVHI SCGFNHTAAV LEHF

Arabidopsis Description

RUG1 [Source:UniProtKB/TrEMBL;Acc:A0A178UAH3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.