Factsheet for Os11t0545800-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 6
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

mitochondrion: 23257241
plastid: 23257241

gfp PMID: 23257241 doi

L Xu, C Carrie, SR Law, MW Murcha, J Whelan

Australian Research Council Centre of Excellence in Plant Energy Biology, University of Western Australia, Crawley, Western Australia 6009, Australia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES09892	Sorghum	mitochondrion	84.71	86.12
HORVU1Hr1G016430.4	Barley	cytosol	78.82	84.38
TraesCS1D01G078800.1	Wheat	mitochondrion	81.41	82.58
TraesCS1A01G076400.1	Wheat	mitochondrion	81.41	82.58
Zm00001d052624_P007	Maize	plastid	79.06	73.36
GSMUA_Achr10P...	Banana	mitochondrion	64.47	65.24
VIT_07s0031g02850.t01	Wine grape	mitochondrion	55.76	56.43
KRH63955	Soybean	mitochondrion	54.82	55.88
KRH53977	Soybean	cytosol, mitochondrion, nucleus	41.88	55.62
CDY44785	Canola	mitochondrion	55.29	54.27
Solyc05g056590.2.1	Tomato	cytosol	35.06	54.18
Bra028647.1-P	Field mustard	mitochondrion	55.53	54.0
CDY40735	Canola	mitochondrion	55.53	54.0
AT5G08710.1	Thale cress	mitochondrion	54.59	53.46
Os01t0777800-01	Rice	cytosol	25.65	27.18
Os03t0599600-01	Rice	mitochondrion	12.0	26.84
Os08t0430700-02	Rice	cytosol	24.24	26.08
Os04t0435700-01	Rice	plasma membrane	25.88	24.28
Os02t0554100-01	Rice	cytosol, plasma membrane	24.71	23.18
Os01t0964800-01	Rice	mitochondrion	27.76	20.38
Os09t0560450-01	Rice	mitochondrion	20.71	20.14
Os04t0226400-01	Rice	plastid	9.65	18.89
Os12t0284000-01	Rice	cytosol	22.12	17.6
Os02t0597000-01	Rice	cytosol	20.24	16.01
Os05t0106700-00	Rice	mitochondrion	28.24	12.77
Os01t0700200-01	Rice	cytosol	30.35	12.36
Os05t0545200-00	Rice	cytosol	29.18	12.23
Os05t0384800-01	Rice	cytosol	31.06	12.15
Os01t0952300-00	Rice	cytosol	30.82	11.46
Os04t0686200-01	Rice	plasma membrane	28.0	11.26
Os04t0583700-00	Rice	cytosol	26.82	11.03
Os08t0430600-01	Rice	plastid	0.47	1.26
Os02t0684900-01	Rice	cytosol	0.71	0.7
Os09t0560500-01	Rice	mitochondrion, plastid	0.0	0.0

Protein Annotations

EnsemblPlants:Os11t0545800-01	EnsemblPlantsGene:Os11g0545800	EntrezGene:4350691	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091
InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF245	PFAM:PF00415	PFscan:PS50012
PRINTS:PR00633	ProteinID:BAT14377.1	ProteinID:EEE52248.1	RefSeq:XP_015615620.1	ScanProsite:PS00626	SEG:seg
SUPFAM:SSF50985	UniParc:UPI000193563E	UniProt:B9GB42	MapMan:35.1	:	:

Description

Similar to regulator of chromosome condensation (RCC1) family protein / UVB-resistance protein-related. (Os11t0545800-01)

Coordinates

chr11:-:20119120..20125235

Molecular Weight (calculated)

45404.4 Da

IEP (calculated)

6.870

GRAVY (calculated)

-0.260

Length

425 amino acids

Sequence
(BLAST)

001: MWRARRWPWP WRSQRRAARM LSSGEPAAGR RRVAALWGNG DYGRLGMGAL ESRWSPTACP FFLTGRPGDD DDDPPASLAC GGAHTLFLTE SGRVFAAGLN
101: DFGQLGIGSS VTHSLEPIEV SGFDEKVVEV SAGNHHSCAV TADGKLFAWG RNSSGQLGLG KRAGKVVSTP RKVDCLADAR VKMVALGSEH SIATTEEGEV
201: LSWGAAGAGR LGHGHKTSIL GFSITTSEYT PRLIKNLDGV KIKRIAAGML HSACIDEKGT LFIFGQKTEK GFGRSGDELR PTVVEEVPFS EEVACGGYHT
301: CVVTDSGDLY SWGSNENGCL GLGGTDMVRS PEVLKSSLFK FPVSKVSCGW KHTAVISGGD IYTWGWGGAN GTFFEEGHSS GGQLGHGNDV DYFEPMMVEF
401: GKNARAVHVS CGFNHTGAIF EYSEN

Best Arabidopsis Sequence Match ( AT5G08710.1 )
(BLAST)

001: MLTRAIGRVR IPVSRIQGSN CTSGLLKDSK LGPIGVCCSR WVSSESGKRF AAMWGSGDYG RLGLGNLDSQ WTPAVCSALS DHSITAVACG GAHTLFLTET
101: RRVFATGLND CGQLGVSDVK SHAMDPLEVS GLDKDILHIS AGYYHSAAIT VDGELYMWGK NSSGQLGLGK KAARVVRVPT KVEALHGITI QSVALGSEHS
201: VAVTDGGEVL SWGGGGSGRL GHGHQSSLFG ILRSNSEFTP RLIKELEGIK VTNVAAGLLH SACTDENGSA FMFGEKSINK MGFGGVRNAT TPSIISEVPY
301: AEEVACGGYH TCVVTRGGEL YTWGSNENGC LGTDSTYVSH SPVRVEGPFL ESTVSQVSCG WKHTAAISDN NVFTWGWGGS HGTFSVDGHS SGGQLGHGSD
401: VDYARPAMVD LGKNVRAVHI SCGFNHTAAV LEHF

Arabidopsis Description

RUG1 [Source:UniProtKB/TrEMBL;Acc:A0A178UAH3]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.