Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G347100.2 | Wheat | cytosol | 79.3 | 78.13 |
| TraesCS3A01G319000.1 | Wheat | cytosol | 78.8 | 77.07 |
| TraesCS3D01G312300.1 | Wheat | cytosol | 78.05 | 76.9 |
| OQU87663 | Sorghum | cytosol | 75.31 | 74.75 |
| Zm00001d043280_P001 | Maize | cytosol | 74.31 | 73.04 |
| HORVU3Hr1G076310.2 | Barley | cytosol, mitochondrion, nucleus | 78.05 | 68.94 |
| GSMUA_Achr6P29750_001 | Banana | cytosol | 54.86 | 55.42 |
| VIT_01s0026g01520.t01 | Wine grape | cytosol | 50.87 | 51.52 |
| CDY46423 | Canola | cytosol | 47.88 | 50.66 |
| Bra016304.1-P | Field mustard | cytosol | 46.13 | 50.14 |
| Solyc05g006940.2.1 | Tomato | cytosol | 47.88 | 48.73 |
| CDY69131 | Canola | cytosol | 38.9 | 48.6 |
| AT1G27060.1 | Thale cress | cytosol | 46.63 | 48.45 |
| CDY16215 | Canola | cytosol | 46.63 | 48.45 |
| PGSC0003DMT400045467 | Potato | cytosol | 47.88 | 48.36 |
| Bra024664.1-P | Field mustard | cytosol | 42.14 | 47.08 |
| KRH74759 | Soybean | nucleus | 45.89 | 32.68 |
| KRH69375 | Soybean | nucleus | 46.38 | 31.47 |
| CDY14709 | Canola | nucleus | 46.88 | 27.21 |
| Os08t0430700-02 | Rice | cytosol | 25.44 | 25.82 |
| Os11t0545800-01 | Rice | mitochondrion | 27.18 | 25.65 |
| Os04t0435700-01 | Rice | plasma membrane | 23.19 | 20.53 |
| Os02t0554100-01 | Rice | cytosol, plasma membrane | 22.19 | 19.65 |
| Os03t0599600-01 | Rice | mitochondrion | 8.98 | 18.95 |
| Os09t0560450-01 | Rice | mitochondrion | 20.45 | 18.76 |
| Os01t0964800-01 | Rice | mitochondrion | 25.69 | 17.79 |
| Os04t0226400-01 | Rice | plastid | 8.73 | 16.13 |
| Os12t0284000-01 | Rice | cytosol | 19.2 | 14.42 |
| Os02t0597000-01 | Rice | cytosol | 18.45 | 13.78 |
| Os01t0700200-01 | Rice | cytosol | 28.43 | 10.92 |
| Os05t0106700-00 | Rice | mitochondrion | 25.19 | 10.74 |
| Os05t0545200-00 | Rice | cytosol | 26.93 | 10.65 |
| Os04t0686200-01 | Rice | plasma membrane | 26.93 | 10.22 |
| Os05t0384800-01 | Rice | cytosol | 27.18 | 10.04 |
| Os01t0952300-00 | Rice | cytosol | 27.68 | 9.71 |
| Os04t0583700-00 | Rice | cytosol | 24.69 | 9.57 |
| Os08t0430600-01 | Rice | plastid | 0.0 | 0.0 |
| Os09t0560500-01 | Rice | mitochondrion, plastid | 0.0 | 0.0 |
| Os02t0684900-01 | Rice | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:Os01t0777800-01 | EnsemblPlantsGene:Os01g0777800 | EntrezGene:4326428 | Gene3D:2.130.10.30 | InterPro:IPR000408 | InterPro:IPR009091 |
| InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF303 | PFAM:PF00415 | PFscan:PS50012 |
| PRINTS:PR00633 | ProteinID:BAS74620.1 | RefSeq:XP_015628661.1 | ScanProsite:PS00626 | SEG:seg | SUPFAM:SSF50985 |
| UniParc:UPI0001C7ED52 | UniProt:A0A0P0V8V0 | MapMan:35.1 | : | : | : |
Description
Hypothetical conserved gene. (Os01t0777800-01)
Coordinates
chr1:-:32929073..32932792
Molecular Weight (calculated)
43108.3 Da
IEP (calculated)
6.036
GRAVY (calculated)
-0.280
Length
401 amino acids
Sequence
(BLAST)
(BLAST)
001: MEAAAAAEEE EEEAVWAWSW GAGTDGQLGN GGFQDHHLPQ PLLLPPRCRG LVSFVAGGGA HAIALTSDGE VFTWGRGTHG QLGHGDVENI PHPKLVKFFE
101: NYMITCVSAG WNHSGFATDS GQLFMCGDGS FGQLGAGDNH PRNLPFEVAY FTTKHVVRLA LGMRHSLVLL KDNSVYGFGS TRRGQIGRCT RNQKFYDVPR
201: IIDGFPDCKI GNIYANGDHS AALDESGQLY IWGRALIGEH DDDQPRPVFP SLGISQVALG WHHALVLSGE LYTIGAYRHR KLDPHVLPSA EPVQRLNPAT
301: TSHSHDESSS SSTLVKVPCV DGEQVVHIAA GTEHSASVTD KGTVFTWGWG EHGQLGLGDT CDQVTPQRVN IGDKRPCSSA SVNVYCGSGF TIAVNSGLES
401: D
101: NYMITCVSAG WNHSGFATDS GQLFMCGDGS FGQLGAGDNH PRNLPFEVAY FTTKHVVRLA LGMRHSLVLL KDNSVYGFGS TRRGQIGRCT RNQKFYDVPR
201: IIDGFPDCKI GNIYANGDHS AALDESGQLY IWGRALIGEH DDDQPRPVFP SLGISQVALG WHHALVLSGE LYTIGAYRHR KLDPHVLPSA EPVQRLNPAT
301: TSHSHDESSS SSTLVKVPCV DGEQVVHIAA GTEHSASVTD KGTVFTWGWG EHGQLGLGDT CDQVTPQRVN IGDKRPCSSA SVNVYCGSGF TIAVNSGLES
401: D
001: MAEHGETQAD EEEEEQVWSW GAGTDGQLGT TKLQDELLPQ LLSLTSLPSI SMLACGGAHV IALTSGGKVF TWGRGSSGQL GHGDILNITL PKLVSFFDDS
101: VITQAAAGWS HSGFVSDSGC IFTCGNGSFG QLGHGDTLSL STPAKVSHFN NDSVKMVACG MRHSLVLFAG NQVCGFGSGK RGQLGFSSDR IKSVNLPCVV
201: SGLKDVEVVR ISANGDHSAA ISADGQFFSW GRGFCGGPDV HAPQSLPSPL SFREVAVGWN HALLLTVDGE VFKLGSTLNK QPEKQQLQID SSEALFEKVP
301: DFDGVKVMQI AAGAEHSAAV TENGEVKTWG WGEHGQLGLG NTNDQTSPEL VSLGSIDLRT KEIKVYCGSG FTYAVKRKQE LSPTSS
101: VITQAAAGWS HSGFVSDSGC IFTCGNGSFG QLGHGDTLSL STPAKVSHFN NDSVKMVACG MRHSLVLFAG NQVCGFGSGK RGQLGFSSDR IKSVNLPCVV
201: SGLKDVEVVR ISANGDHSAA ISADGQFFSW GRGFCGGPDV HAPQSLPSPL SFREVAVGWN HALLLTVDGE VFKLGSTLNK QPEKQQLQID SSEALFEKVP
301: DFDGVKVMQI AAGAEHSAAV TENGEVKTWG WGEHGQLGLG NTNDQTSPEL VSLGSIDLRT KEIKVYCGSG FTYAVKRKQE LSPTSS
Arabidopsis Description
At1g27060 [Source:UniProtKB/TrEMBL;Acc:A2RVN2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.