Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_01s0026g01520.t01 | Wine grape | cytosol | 56.17 | 56.31 |
| Zm00001d043280_P001 | Maize | cytosol | 56.42 | 54.9 |
| Os01t0777800-01 | Rice | cytosol | 55.42 | 54.86 |
| OQU87663 | Sorghum | cytosol | 55.42 | 54.46 |
| TraesCS3B01G347100.2 | Wheat | cytosol | 55.67 | 54.3 |
| TraesCS3D01G312300.1 | Wheat | cytosol | 55.16 | 53.81 |
| TraesCS3A01G319000.1 | Wheat | cytosol | 55.16 | 53.41 |
| CDY46423 | Canola | cytosol | 50.88 | 53.3 |
| Bra016304.1-P | Field mustard | cytosol | 48.87 | 52.57 |
| Solyc05g006940.2.1 | Tomato | cytosol | 52.14 | 52.54 |
| PGSC0003DMT400045467 | Potato | cytosol | 52.14 | 52.14 |
| CDY16215 | Canola | cytosol | 50.38 | 51.81 |
| CDY69131 | Canola | cytosol | 41.56 | 51.4 |
| AT1G27060.1 | Thale cress | cytosol | 48.61 | 50.0 |
| Bra024664.1-P | Field mustard | cytosol | 45.09 | 49.86 |
| HORVU3Hr1G076310.2 | Barley | cytosol, mitochondrion, nucleus | 55.16 | 48.24 |
| KRH74759 | Soybean | nucleus | 50.38 | 35.52 |
| KRH69375 | Soybean | nucleus | 51.64 | 34.69 |
| CDY14709 | Canola | nucleus | 50.13 | 28.8 |
| GSMUA_Achr10P... | Banana | mitochondrion | 26.45 | 25.0 |
| GSMUA_Achr9P15560_001 | Banana | cytosol | 22.42 | 23.92 |
| GSMUA_Achr6P17690_001 | Banana | cytosol | 25.69 | 23.23 |
| GSMUA_Achr3P19000_001 | Banana | nucleus | 25.44 | 22.49 |
| GSMUA_Achr8P06920_001 | Banana | cytosol | 15.87 | 19.27 |
| GSMUA_Achr5P12060_001 | Banana | mitochondrion | 21.91 | 19.25 |
| GSMUA_Achr10P... | Banana | cytosol | 22.67 | 18.63 |
| GSMUA_Achr1P00100_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 21.66 | 17.48 |
| GSMUA_Achr2P10610_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 21.66 | 17.48 |
| GSMUA_Achr9P02110_001 | Banana | plastid | 21.16 | 15.61 |
| GSMUA_AchrUn_... | Banana | cytosol, plastid | 20.4 | 15.08 |
| GSMUA_AchrUn_... | Banana | cytosol | 18.64 | 13.88 |
| GSMUA_Achr8P00080_001 | Banana | endoplasmic reticulum | 27.46 | 11.66 |
| GSMUA_Achr5P08220_001 | Banana | cytosol | 28.97 | 10.45 |
| GSMUA_Achr1P02140_001 | Banana | cytosol | 22.42 | 9.97 |
| GSMUA_Achr8P07850_001 | Banana | cytosol | 27.46 | 9.86 |
| GSMUA_AchrUn_... | Banana | nucleus | 27.46 | 9.45 |
| GSMUA_Achr4P00510_001 | Banana | cytosol | 22.17 | 9.16 |
| GSMUA_Achr5P11650_001 | Banana | cytosol | 22.17 | 9.07 |
| GSMUA_Achr2P20470_001 | Banana | endoplasmic reticulum, plasma membrane | 21.41 | 8.61 |
| GSMUA_Achr6P13030_001 | Banana | endoplasmic reticulum | 20.91 | 8.48 |
| GSMUA_Achr7P20980_001 | Banana | cytosol | 22.67 | 6.19 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P29750_001 | EnsemblPlants:GSMUA_Achr6T29750_001 | EnsemblPlantsGene:GSMUA_Achr6G29750_001 | Gene3D:2.130.10.30 | InterPro:IPR000408 | InterPro:IPR009091 |
| InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens | PFAM:PF00415 | PFscan:PS50012 | PRINTS:PR00633 | ScanProsite:PS00626 |
| SEG:seg | SUPFAM:SSF50985 | UniParc:UPI00029486ED | UniProt:M0TBC0 | MapMan:35.1 | : |
Description
Putative Secretion-regulating guanine nucleotide exchange factor [Source:GMGC_GENE;Acc:GSMUA_Achr6G29750_001]
Coordinates
chr6:-:29920690..29928455
Molecular Weight (calculated)
42109.8 Da
IEP (calculated)
6.370
GRAVY (calculated)
-0.106
Length
397 amino acids
Sequence
(BLAST)
(BLAST)
001: MEIAEEAVEM AAAEEEEEVY AWSWGAGTDG QLGTGTIEDQ HLPQPLPHLP TAVSRVACGG AHAVALTGDG KVLTWGRGTH GQLGHGKFES CSRPKPVKFL
101: ESLTMSYVSA GWNHSGFVTD TGCLFMCGDG SFGQLGNGDN QSHGSPFKVL FFVSQHVKQA ACGMRHSLAL VTGDMIYGFG SGRHGQIGKH LSGGQRLLNL
201: PAAVQGFDDR KIVSIHANGD HSAALSASGQ LYLWGRRFSG NVDNHIPQIA PLSLRISQVA LGWNHALVMA DGFVYMLGGS RHGLLAETQK VNLVEHGLPT
301: LASCTTSNGS PLTLERVPCL DEKVVSIAAG AEHSALVTEK GSVMTWGWGE HGQLGLGDTS DQTRPQEVKL DCNGSFLWTQ FAVYCGSGFT IVAKATE
101: ESLTMSYVSA GWNHSGFVTD TGCLFMCGDG SFGQLGNGDN QSHGSPFKVL FFVSQHVKQA ACGMRHSLAL VTGDMIYGFG SGRHGQIGKH LSGGQRLLNL
201: PAAVQGFDDR KIVSIHANGD HSAALSASGQ LYLWGRRFSG NVDNHIPQIA PLSLRISQVA LGWNHALVMA DGFVYMLGGS RHGLLAETQK VNLVEHGLPT
301: LASCTTSNGS PLTLERVPCL DEKVVSIAAG AEHSALVTEK GSVMTWGWGE HGQLGLGDTS DQTRPQEVKL DCNGSFLWTQ FAVYCGSGFT IVAKATE
001: MAEHGETQAD EEEEEQVWSW GAGTDGQLGT TKLQDELLPQ LLSLTSLPSI SMLACGGAHV IALTSGGKVF TWGRGSSGQL GHGDILNITL PKLVSFFDDS
101: VITQAAAGWS HSGFVSDSGC IFTCGNGSFG QLGHGDTLSL STPAKVSHFN NDSVKMVACG MRHSLVLFAG NQVCGFGSGK RGQLGFSSDR IKSVNLPCVV
201: SGLKDVEVVR ISANGDHSAA ISADGQFFSW GRGFCGGPDV HAPQSLPSPL SFREVAVGWN HALLLTVDGE VFKLGSTLNK QPEKQQLQID SSEALFEKVP
301: DFDGVKVMQI AAGAEHSAAV TENGEVKTWG WGEHGQLGLG NTNDQTSPEL VSLGSIDLRT KEIKVYCGSG FTYAVKRKQE LSPTSS
101: VITQAAAGWS HSGFVSDSGC IFTCGNGSFG QLGHGDTLSL STPAKVSHFN NDSVKMVACG MRHSLVLFAG NQVCGFGSGK RGQLGFSSDR IKSVNLPCVV
201: SGLKDVEVVR ISANGDHSAA ISADGQFFSW GRGFCGGPDV HAPQSLPSPL SFREVAVGWN HALLLTVDGE VFKLGSTLNK QPEKQQLQID SSEALFEKVP
301: DFDGVKVMQI AAGAEHSAAV TENGEVKTWG WGEHGQLGLG NTNDQTSPEL VSLGSIDLRT KEIKVYCGSG FTYAVKRKQE LSPTSS
Arabidopsis Description
At1g27060 [Source:UniProtKB/TrEMBL;Acc:A2RVN2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.