Factsheet for GSMUA_Achr5P12060_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 3
extracellular 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr1P00100_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	86.95	79.88
GSMUA_Achr2P10610_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	79.65	73.17
KXG35074	Sorghum	cytosol	77.21	72.26
Zm00001d019595_P001	Maize	cytosol	76.33	71.43
PGSC0003DMT400003817	Potato	cytosol	59.73	70.68
Zm00001d005395_P001	Maize	cytosol	75.22	70.39
TraesCS2B01G254900.2	Wheat	cytosol	74.56	69.63
TraesCS2D01G241400.2	Wheat	cytosol	74.11	69.21
TraesCS2A01G236300.4	Wheat	cytosol	74.11	68.23
VIT_19s0014g03080.t01	Wine grape	cytosol	72.12	66.26
KRH22127	Soybean	cytosol	67.26	62.68
PGSC0003DMT400032346	Potato	plasma membrane	66.37	62.24
Solyc07g063300.2.1	Tomato	plasma membrane	66.81	62.14
KRH27216	Soybean	cytosol	67.26	60.2
CDY56827	Canola	cytosol	62.61	59.33
CDX97668	Canola	cytosol	62.61	59.33
Bra027244.1-P	Field mustard	cytosol	63.5	58.57
AT3G15430.2	Thale cress	cytosol	62.83	58.2
KRH49501	Soybean	cytosol	20.8	54.34
Bra021109.1-P	Field mustard	endoplasmic reticulum, extracellular	63.27	34.79
CDY21840	Canola	endoplasmic reticulum, extracellular	63.05	34.5
CDY20113	Canola	endoplasmic reticulum, extracellular	62.83	34.42
GSMUA_Achr6P17690_001	Banana	cytosol	25.89	26.65
GSMUA_Achr3P19000_001	Banana	nucleus	25.44	25.61
GSMUA_AchrUn_...	Banana	cytosol, plastid	26.99	22.72
GSMUA_Achr9P02110_001	Banana	plastid	26.99	22.68
GSMUA_Achr9P15560_001	Banana	cytosol	18.14	22.04
GSMUA_Achr6P29750_001	Banana	cytosol	19.25	21.91
GSMUA_AchrUn_...	Banana	cytosol	25.44	21.58
GSMUA_Achr10P...	Banana	mitochondrion	17.7	19.05
GSMUA_Achr8P06920_001	Banana	cytosol	12.83	17.74
GSMUA_Achr10P...	Banana	cytosol	18.58	17.39
GSMUA_Achr8P00080_001	Banana	endoplasmic reticulum	26.99	13.05
GSMUA_Achr5P08220_001	Banana	cytosol	29.65	12.18
GSMUA_Achr8P07850_001	Banana	cytosol	28.98	11.86
GSMUA_AchrUn_...	Banana	nucleus	28.1	11.01
GSMUA_Achr2P20470_001	Banana	endoplasmic reticulum, plasma membrane	23.67	10.84
GSMUA_Achr6P13030_001	Banana	endoplasmic reticulum	23.23	10.73
GSMUA_Achr4P00510_001	Banana	cytosol	22.35	10.51
GSMUA_Achr1P02140_001	Banana	cytosol	20.58	10.41
GSMUA_Achr5P11650_001	Banana	cytosol	20.58	9.59
GSMUA_Achr7P20980_001	Banana	cytosol	22.35	6.95

Protein Annotations

EnsemblPlants:GSMUA_Achr5P12060_001	EnsemblPlants:GSMUA_Achr5T12060_001	EnsemblPlantsGene:GSMUA_Achr5G12060_001	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091
InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF302	PFAM:PF00415	PFscan:PS50012
PRINTS:PR00633	ScanProsite:PS00626	SEG:seg	SUPFAM:SSF50985	UniParc:UPI000295D9D9	UniProt:M0SXT5
MapMan:35.1	:	:	:	:	:

Description

Putative E3 ubiquitin-protein ligase HERC2 [Source:GMGC_GENE;Acc:GSMUA_Achr5G12060_001]

Coordinates

chr5:-:8731721..8736321

Molecular Weight (calculated)

49084.3 Da

IEP (calculated)

8.070

GRAVY (calculated)

-0.142

Length

452 amino acids

Sequence
(BLAST)

001: MFSGAHGLLP NKFRSMVEFA AFHICMTHTI FGSLPQSART DLLGRCHGNW KKVLRFLQSV EQSSCSVETS AGNMQVTTGR YHTLLIHDSS VYSCGSSLCG
101: VLGHGQDTTQ CAAFSRINFP SVSHVIHISA SHNHAAFVTQ TGEVFTCGDN SSFCCGHGEV GRTIFRPTRI EALKGIPCKQ VATGLSFTVI LTMQGQIYTC
201: GSNTHGQLGH GDTVDRPTPR NIEYFEGLGH VVQISAGASY TFAVTYDGRI HSFGSCNNFC LGHGDQHDEL VPRVIQSFRR RNIHILRVSA GDEHAVALDS
301: SGYVYTWGRG YCGALGHGDE NDKTSPELLA TLKGHLAVQV CARKRKTFVL TDEGSVFAFG WMGFGSLGFS DRGSSDKVMK PRVLDSLKSH HVTQISTGLY
401: HTVGVTNRGL VFGFGDNERA QLGHEKMRGC LKPTEIVVQR TMDDIAIAAQ SG

Best Arabidopsis Sequence Match ( AT3G15430.6 )
(BLAST)

001: MADRNCLISF EDLPSHLILE VLTSGRLSAV DLLSLELTSK VFGGSHGFYP LKFRSLADYA ASQLCSMHPV YVGMGLTTQK ELFANCEGNW KRLFSFLQSV
101: EQSSDMVETS QGKMQIATGK YHTLLINNSK VYSCGVSLSG VLAHGSETTQ CVAFTPIEFP FPAQVAQVSA TQNHSAFVLQ SGQVLTCGDN SSHCCGHLDT
201: SRPIFRPKLV EALKGTPCKQ VAAGLHFTVF LSREGHAYTC GSNTHGQLGH GDTLDRPVPK VVEFLKTIGP VVQIAAGPSY VLAVTQDGSV YSFGSGSNFC
301: LGHGEQQDEL QPRVIQAFKR KGIHILRVSA GDEHAVALDS NGRVYTWGKG YCGALGHGDE NDKITPQVLV NLNNCLAVQV CARKRKTFVL VEGGLLYGFG
401: WMGFGSLGFP DRGVSDKVLR PRVLECLKPH RVSQVSTGLY HTIVVTQRGR IFGFGDNERA QLGHDSLRGC LEPTEIFLHC GRSRSRLC

Arabidopsis Description

MJK13.9 protein [Source:UniProtKB/TrEMBL;Acc:Q9LDU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.