Factsheet for PGSC0003DMT400032346

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
plasma membrane 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
golgi 2
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	plasma membrane
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400003817	Potato	cytosol	76.97	97.12
Solyc07g063300.2.1	Tomato	plasma membrane	97.51	96.71
VIT_19s0014g03080.t01	Wine grape	cytosol	75.73	74.19
KRH22127	Soybean	cytosol	73.03	72.58
KRH27216	Soybean	cytosol	72.2	68.91
CDX97668	Canola	cytosol	68.05	68.76
AT3G15430.2	Thale cress	cytosol	69.5	68.65
CDY56827	Canola	cytosol	67.63	68.34
GSMUA_Achr1P00100_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	69.29	67.89
Bra027244.1-P	Field mustard	cytosol	68.67	67.55
GSMUA_Achr5P12060_001	Banana	mitochondrion	62.24	66.37
Zm00001d019595_P001	Maize	cytosol	65.56	65.42
KXG35074	Sorghum	cytosol	65.35	65.22
TraesCS2D01G241400.2	Wheat	cytosol	64.52	64.26
Zm00001d005395_P001	Maize	cytosol	64.11	63.98
TraesCS2B01G254900.2	Wheat	cytosol	64.11	63.84
TraesCS2A01G236300.4	Wheat	cytosol	64.32	63.14
GSMUA_Achr2P10610_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	64.32	63.01
KRH49501	Soybean	cytosol	20.54	57.23
Bra021109.1-P	Field mustard	endoplasmic reticulum, extracellular	68.88	40.39
CDY20113	Canola	endoplasmic reticulum, extracellular	68.46	40.0
CDY21840	Canola	endoplasmic reticulum, extracellular	68.26	39.83
PGSC0003DMT400016865	Potato	cytosol, extracellular, plastid	10.37	28.9
PGSC0003DMT400027900	Potato	cytosol	26.97	24.39
PGSC0003DMT400045467	Potato	cytosol	19.71	23.93
PGSC0003DMT400032945	Potato	extracellular	19.29	23.79
PGSC0003DMT400003726	Potato	cytosol	16.8	17.38
PGSC0003DMT400059356	Potato	cytosol	24.9	11.64
PGSC0003DMT400002081	Potato	cytosol	26.56	11.37
PGSC0003DMT400043094	Potato	nucleus	25.31	11.34
PGSC0003DMT400034994	Potato	cytosol	23.03	10.72
PGSC0003DMT400001620	Potato	cytosol	4.15	5.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400032346	EnsemblPlantsGene:PGSC0003DMG400012425	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF302	PFAM:PF00415	PFscan:PS50012	PGSC:PGSC0003DMG400012425
PRINTS:PR00633	ScanProsite:PS00626	SUPFAM:SSF50985	UniParc:UPI00029520BD	UniProt:M1AX96	MapMan:35.1

Description

Ran GTPase binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012425]

Coordinates

chr7:+:53337606..53342592

Molecular Weight (calculated)

52090.2 Da

IEP (calculated)

7.537

GRAVY (calculated)

-0.062

Length

482 amino acids

Sequence
(BLAST)

001: MGDRLRSTSM EDLPVHLILE ILLSGRLAVI DLISLELTSR TFRGTHGLFP KKFKSLVDYA AFQLCGLSSI YASLHCNAQE ELLKRCNGNW KRLLRFLMAV
101: EQSSDMVETS AGNMQIRSGR YHTLLINDSA AYSCGSSLCG VLGHGPETTQ CVEFTRISFP VPVQVAQVSA SHNHAAFVTG SGQVFTCGDN SSYCCGHSDT
201: GRPIFTPRMV EALKNIPVKQ VAAGLSFTMF LTRKGHVFTC GTNGHGQLGH GDTSDRPTPT CIELLASIGS VVQIAAGPSY ALAVSDDGTL YSFGSGTNFC
301: LGHGEQQNEL QPRAIQSFKR RDINVARVSA GDEHVVALDS TGYVYTWGKG YCGALGHGDE IDKTTPSHLT SLKSHLAVQV CASKRKTFVL VDDGSVYGFG
401: WMGFGSLGFL DRGASDKVLK PRILESLRSH HISQISTGLY HSVVVTNCGR VFGFGDNERA QLGHDAVRGC LEPTEMFMEK AA

Best Arabidopsis Sequence Match ( AT3G15430.6 )
(BLAST)

001: MADRNCLISF EDLPSHLILE VLTSGRLSAV DLLSLELTSK VFGGSHGFYP LKFRSLADYA ASQLCSMHPV YVGMGLTTQK ELFANCEGNW KRLFSFLQSV
101: EQSSDMVETS QGKMQIATGK YHTLLINNSK VYSCGVSLSG VLAHGSETTQ CVAFTPIEFP FPAQVAQVSA TQNHSAFVLQ SGQVLTCGDN SSHCCGHLDT
201: SRPIFRPKLV EALKGTPCKQ VAAGLHFTVF LSREGHAYTC GSNTHGQLGH GDTLDRPVPK VVEFLKTIGP VVQIAAGPSY VLAVTQDGSV YSFGSGSNFC
301: LGHGEQQDEL QPRVIQAFKR KGIHILRVSA GDEHAVALDS NGRVYTWGKG YCGALGHGDE NDKITPQVLV NLNNCLAVQV CARKRKTFVL VEGGLLYGFG
401: WMGFGSLGFP DRGVSDKVLR PRVLECLKPH RVSQVSTGLY HTIVVTQRGR IFGFGDNERA QLGHDSLRGC LEPTEIFLHC GRSRSRLC

Arabidopsis Description

MJK13.9 protein [Source:UniProtKB/TrEMBL;Acc:Q9LDU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.