Factsheet for GSMUA_Achr1P00100_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, endoplasmic reticulum, vacuole, cytosol, plasma membrane, golgi

Predictor Summary:

nucleus 3
extracellular 4
endoplasmic reticulum 4
vacuole 4
plasma membrane 4
golgi 4
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, secretory
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P12060_001	Banana	mitochondrion	79.88	86.95
GSMUA_Achr2P10610_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	79.27	79.27
KXG35074	Sorghum	cytosol	77.44	78.88
Zm00001d019595_P001	Maize	cytosol	77.44	78.88
Zm00001d005395_P001	Maize	cytosol	75.81	77.23
TraesCS2B01G254900.2	Wheat	cytosol	74.59	75.83
TraesCS2D01G241400.2	Wheat	cytosol	74.39	75.62
TraesCS2A01G236300.4	Wheat	cytosol	74.19	74.34
VIT_19s0014g03080.t01	Wine grape	cytosol	71.95	71.95
PGSC0003DMT400003817	Potato	cytosol	55.69	71.73
PGSC0003DMT400032346	Potato	plasma membrane	67.89	69.29
Solyc07g063300.2.1	Tomato	plasma membrane	68.29	69.14
KRH22127	Soybean	cytosol	68.09	69.07
KRH27216	Soybean	cytosol	67.68	65.94
CDY56827	Canola	cytosol	60.57	62.47
CDX97668	Canola	cytosol	60.57	62.47
Bra027244.1-P	Field mustard	cytosol	61.59	61.84
AT3G15430.2	Thale cress	cytosol	61.18	61.68
KRH49501	Soybean	cytosol	20.53	58.38
Bra021109.1-P	Field mustard	endoplasmic reticulum, extracellular	62.2	37.23
CDY20113	Canola	endoplasmic reticulum, extracellular	61.99	36.97
CDY21840	Canola	endoplasmic reticulum, extracellular	61.99	36.92
GSMUA_Achr6P17690_001	Banana	cytosol	26.63	29.84
GSMUA_Achr3P19000_001	Banana	nucleus	26.22	28.73
GSMUA_AchrUn_...	Banana	cytosol, plastid	26.63	24.39
GSMUA_Achr9P02110_001	Banana	plastid	26.42	24.16
GSMUA_Achr9P15560_001	Banana	cytosol	17.68	23.39
GSMUA_AchrUn_...	Banana	cytosol	25.0	23.08
GSMUA_Achr6P29750_001	Banana	cytosol	17.48	21.66
GSMUA_Achr10P...	Banana	mitochondrion	17.48	20.48
GSMUA_Achr8P06920_001	Banana	cytosol	11.99	18.04
GSMUA_Achr10P...	Banana	cytosol	17.28	17.6
GSMUA_Achr8P00080_001	Banana	endoplasmic reticulum	24.39	12.83
GSMUA_Achr5P08220_001	Banana	cytosol	28.66	12.82
GSMUA_Achr8P07850_001	Banana	cytosol	28.46	12.67
GSMUA_Achr1P02140_001	Banana	cytosol	21.95	12.09
GSMUA_Achr4P00510_001	Banana	cytosol	22.97	11.76
GSMUA_Achr2P20470_001	Banana	endoplasmic reticulum, plasma membrane	23.17	11.55
GSMUA_AchrUn_...	Banana	nucleus	27.03	11.54
GSMUA_Achr5P11650_001	Banana	cytosol	22.15	11.24
GSMUA_Achr6P13030_001	Banana	endoplasmic reticulum	21.14	10.62
GSMUA_Achr7P20980_001	Banana	cytosol	22.97	7.78

Protein Annotations

EnsemblPlants:GSMUA_Achr1P00100_001	EnsemblPlants:GSMUA_Achr1T00100_001	EnsemblPlantsGene:GSMUA_Achr1G00100_001	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091
InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF302	PFAM:PF00415	PFAM:PF13540
PFscan:PS50012	PRINTS:PR00633	ScanProsite:PS00626	SEG:seg	SUPFAM:SSF50985	UniParc:UPI000294E61B
UniProt:M0RVR8	MapMan:35.1	:	:	:	:

Description

Putative E3 ubiquitin-protein ligase HERC2 [Source:GMGC_GENE;Acc:GSMUA_Achr1G00100_001]

Coordinates

chr1:-:83642..89460

Molecular Weight (calculated)

53251.5 Da

IEP (calculated)

7.646

GRAVY (calculated)

-0.064

Length

492 amino acids

Sequence
(BLAST)

001: MADRSRAFCI EELPAHLILE ILSCGRLGAA DLACLEATCR MFRGADGLFP DKFRSLVEFA AFHICNVHPI FGSLPHNARA NLLDRCNGNW KRLLRFLQSV
101: EQSSSSVETS AGNMQVTTGR YHTLLVHNSS VYSCGSNLCG VLGHGQDTTQ CAAFSRINFP SLSHVIHISA SHNHAAFITQ SGEVFTCGDN SSFCCGHGEV
201: GRTIFKPTRI EALKGIPCKQ VATGLSFTVI LTMRGQVYTC GSNAHGQLGL GDTIDRPTPR IIELFEGLGQ VVQIAAGASY TFVVTDDGTV HSFGSCTNFC
301: LGHGDQHDEL VPRAIQSFKR RNIYIQRVSA GDEHALALDS SGYVYTWGRG YCGALGHGDE NDKTSPELLT SLKGHLAVQV CARKRKTFVL TDEGSVFAFG
401: WMGFGSLGFS DRGSSDKVMK PRILDSLKSH YVSQISTGLY HTVGITNRGL VFGFGDNERA QLGHEKIRGC LKPTEIAVGK MVDDMPIAAP SS

Best Arabidopsis Sequence Match ( AT3G15430.6 )
(BLAST)

001: MADRNCLISF EDLPSHLILE VLTSGRLSAV DLLSLELTSK VFGGSHGFYP LKFRSLADYA ASQLCSMHPV YVGMGLTTQK ELFANCEGNW KRLFSFLQSV
101: EQSSDMVETS QGKMQIATGK YHTLLINNSK VYSCGVSLSG VLAHGSETTQ CVAFTPIEFP FPAQVAQVSA TQNHSAFVLQ SGQVLTCGDN SSHCCGHLDT
201: SRPIFRPKLV EALKGTPCKQ VAAGLHFTVF LSREGHAYTC GSNTHGQLGH GDTLDRPVPK VVEFLKTIGP VVQIAAGPSY VLAVTQDGSV YSFGSGSNFC
301: LGHGEQQDEL QPRVIQAFKR KGIHILRVSA GDEHAVALDS NGRVYTWGKG YCGALGHGDE NDKITPQVLV NLNNCLAVQV CARKRKTFVL VEGGLLYGFG
401: WMGFGSLGFP DRGVSDKVLR PRVLECLKPH RVSQVSTGLY HTIVVTQRGR IFGFGDNERA QLGHDSLRGC LEPTEIFLHC GRSRSRLC

Arabidopsis Description

MJK13.9 protein [Source:UniProtKB/TrEMBL;Acc:Q9LDU3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.