Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7D01G282600.1 | Wheat | cytosol | 79.84 | 78.78 |
| Zm00001d050380_P004 | Maize | cytosol | 82.26 | 78.66 |
| CDY34733 | Canola | cytosol | 70.43 | 78.21 |
| VIT_14s0006g03240.t01 | Wine grape | cytosol | 82.26 | 77.47 |
| KXG25196 | Sorghum | cytosol | 80.91 | 76.98 |
| TraesCS7B01G200200.1 | Wheat | cytosol | 80.38 | 76.86 |
| Solyc02g085780.2.1 | Tomato | cytosol | 80.11 | 76.41 |
| KRG93861 | Soybean | nucleus | 80.91 | 76.2 |
| PGSC0003DMT400032945 | Potato | extracellular | 79.84 | 75.96 |
| TraesCS7A01G284800.1 | Wheat | cytosol | 79.84 | 74.44 |
| Bra008654.1-P | Field mustard | cytosol | 79.03 | 74.06 |
| AT5G16040.1 | Thale cress | cytosol | 78.49 | 73.74 |
| CDX69479 | Canola | cytosol | 78.49 | 73.55 |
| CDY26488 | Canola | cytosol | 78.49 | 73.37 |
| AT3G02510.1 | Thale cress | cytosol | 76.61 | 72.52 |
| Bra021435.1-P | Field mustard | cytosol | 76.08 | 72.19 |
| Zm00001d032229_P002 | Maize | mitochondrion | 80.91 | 71.84 |
| HORVU7Hr1G062090.6 | Barley | cytosol | 79.3 | 71.26 |
| GSMUA_Achr6P17690_001 | Banana | cytosol | 27.96 | 23.69 |
| GSMUA_Achr3P19000_001 | Banana | nucleus | 27.15 | 22.49 |
| GSMUA_Achr6P29750_001 | Banana | cytosol | 23.92 | 22.42 |
| GSMUA_Achr10P... | Banana | mitochondrion | 25.27 | 22.38 |
| GSMUA_Achr8P06920_001 | Banana | cytosol | 19.35 | 22.02 |
| GSMUA_Achr10P... | Banana | cytosol | 24.19 | 18.63 |
| GSMUA_Achr5P12060_001 | Banana | mitochondrion | 22.04 | 18.14 |
| GSMUA_Achr1P00100_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 23.39 | 17.68 |
| GSMUA_Achr9P02110_001 | Banana | plastid | 25.0 | 17.29 |
| GSMUA_Achr2P10610_001 | Banana | cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 22.58 | 17.07 |
| GSMUA_AchrUn_... | Banana | cytosol, plastid | 23.39 | 16.2 |
| GSMUA_AchrUn_... | Banana | cytosol | 22.85 | 15.95 |
| GSMUA_Achr8P00080_001 | Banana | endoplasmic reticulum | 28.76 | 11.44 |
| GSMUA_Achr5P08220_001 | Banana | cytosol | 29.03 | 9.82 |
| GSMUA_Achr6P13030_001 | Banana | endoplasmic reticulum | 23.92 | 9.09 |
| GSMUA_Achr8P07850_001 | Banana | cytosol | 26.61 | 8.96 |
| GSMUA_Achr4P00510_001 | Banana | cytosol | 23.12 | 8.95 |
| GSMUA_Achr2P20470_001 | Banana | endoplasmic reticulum, plasma membrane | 23.12 | 8.71 |
| GSMUA_AchrUn_... | Banana | nucleus | 26.88 | 8.67 |
| GSMUA_Achr1P02140_001 | Banana | cytosol | 20.7 | 8.62 |
| GSMUA_Achr5P11650_001 | Banana | cytosol | 20.97 | 8.04 |
| GSMUA_Achr7P20980_001 | Banana | cytosol | 22.04 | 5.64 |
| Os09t0560500-01 | Rice | mitochondrion, plastid | 0.0 | 0.0 |
| Os02t0684900-01 | Rice | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr9P15560_001 | EnsemblPlants:GSMUA_Achr9T15560_001 | EnsemblPlantsGene:GSMUA_Achr9G15560_001 | Gene3D:2.130.10.30 | InterPro:IPR000408 | InterPro:IPR009091 |
| InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF206 | PFAM:PF00415 | PFscan:PS50012 |
| PRINTS:PR00633 | SUPFAM:SSF50985 | UniParc:UPI000295D741 | UniProt:M0U0L4 | MapMan:35.1 | : |
Description
Putative E3 ubiquitin-protein ligase HERC2 [Source:GMGC_GENE;Acc:GSMUA_Achr9G15560_001]
Coordinates
chr9:+:10271616..10278013
Molecular Weight (calculated)
39970.2 Da
IEP (calculated)
6.893
GRAVY (calculated)
-0.341
Length
372 amino acids
Sequence
(BLAST)
(BLAST)
001: MGNWEEKDWA YSIKSLEPKN VVAVVAGSRN SLAICGNGQL YTWGWNQRGT LGHPPETKTE SVPSLVDALA GVKIVQAAIG GWHCLAVDDQ GRAYAWGGNE
101: YGQCGEEPER KEDGSRALRR DIAIPQRCAP KLSVRQVAAG GTHSVVLTQD GHVWTWGQPW PPGDITQIST PVRVQGLERV RLIAVGAFHN LALLEDGTLW
201: AWGNNEYGQL GTGDTQPRSQ PIPVQGLSGL TLVDIAAGGW HSTALTNVGE VYAWGRGEHG RLGFGDDKSS KMVPQKVQLL VGEDIVQISC GGTHSVACTR
301: DGRMFSFGRG DHGRLGYGRK VTTGHPMEVP IKLLPPRDSG STDGQWCAKL VACGGRHTLA MASWVEEPGD SI
101: YGQCGEEPER KEDGSRALRR DIAIPQRCAP KLSVRQVAAG GTHSVVLTQD GHVWTWGQPW PPGDITQIST PVRVQGLERV RLIAVGAFHN LALLEDGTLW
201: AWGNNEYGQL GTGDTQPRSQ PIPVQGLSGL TLVDIAAGGW HSTALTNVGE VYAWGRGEHG RLGFGDDKSS KMVPQKVQLL VGEDIVQISC GGTHSVACTR
301: DGRMFSFGRG DHGRLGYGRK VTTGHPMEVP IKLLPPRDSG STDGQWCAKL VACGGRHTLA MASWVEEPGD SI
001: MASATSVIAW GSGEDGQLGL GTDEEKELAS VVDALEPFNV RSVVGGSRNS LAICDDGKLF TWGWNQRGTL GHPPETKTES TPSLVKSLAN VKIVQAAIGG
101: WHCLAVDDQG RAYAWGGNEY GQCGEEPSKD ETGRPVRRDI VIPKRCAQQL TVRQVAAGGT HSVVLTREGY VWTWGQPWPP GDIKQISVPV RVQGLENVRL
201: IAVGAFHNLA LKEDGTLWAW GNNEYGQLGT GDTQPRSYPI PVQGLDDLTL VDIAAGGWHS TALTNEGEVY GWGRGEHGRL GFGDNDKSSK MLPQKVNLLA
301: GEDIIQVSCG GTHSVALTRD GRIFSFGRGD HGRLGYGRKV TTGQPLELPI HIPPPEGRFN HTDEEDDGKW IAKHVACGGR HTLAIVEWKY DQEETE
101: WHCLAVDDQG RAYAWGGNEY GQCGEEPSKD ETGRPVRRDI VIPKRCAQQL TVRQVAAGGT HSVVLTREGY VWTWGQPWPP GDIKQISVPV RVQGLENVRL
201: IAVGAFHNLA LKEDGTLWAW GNNEYGQLGT GDTQPRSYPI PVQGLDDLTL VDIAAGGWHS TALTNEGEVY GWGRGEHGRL GFGDNDKSSK MLPQKVNLLA
301: GEDIIQVSCG GTHSVALTRD GRIFSFGRGD HGRLGYGRKV TTGQPLELPI HIPPPEGRFN HTDEEDDGKW IAKHVACGGR HTLAIVEWKY DQEETE
Arabidopsis Description
At5g16040 [Source:UniProtKB/TrEMBL;Acc:Q9LFS0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.