Factsheet for GSMUA_AchrUn_randomP09300_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 2
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P07850_001	Banana	cytosol	65.92	68.78
KRH08750	Soybean	cytosol	37.03	67.03
GSMUA_Achr2P20470_001	Banana	endoplasmic reticulum, plasma membrane	52.91	61.8
VIT_18s0166g00210.t01	Wine grape	cytosol	60.02	61.29
KRG91629	Soybean	cytosol	58.2	61.11
PGSC0003DMT400002081	Potato	cytosol	59.06	60.48
Solyc04g071040.2.1	Tomato	cytosol	59.06	60.48
CDY70949	Canola	cytosol	18.47	60.17
KRH35179	Soybean	cytosol	58.11	59.82
KRH70333	Soybean	cytosol	57.76	59.46
AT5G42140.2	Thale cress	cytosol, endoplasmic reticulum, nucleus	55.16	59.0
CDY47138	Canola	cytosol	53.25	58.64
CDY11586	Canola	cytosol	53.43	58.5
Bra016214.1-P	Field mustard	cytosol	53.08	58.29
KRH30228	Soybean	cytosol	20.47	57.99
Os04t0686200-01	Rice	plasma membrane	52.91	57.71
GSMUA_Achr6P13030_001	Banana	endoplasmic reticulum	48.48	57.1
AT1G76950.1	Thale cress	cytosol	54.55	57.03
Bra003698.1-P	Field mustard	mitochondrion	53.17	56.92
EES13137	Sorghum	cytosol	52.47	56.86
CDX88324	Canola	cytosol	52.3	56.83
Bra015708.1-P	Field mustard	cytosol	52.82	56.7
CDX87557	Canola	cytosol	52.56	56.48
CDY48550	Canola	cytosol	47.53	55.92
TraesCS2B01G609200.1	Wheat	cytosol	51.69	55.7
TraesCS2D01G589800.1	Wheat	cytosol	51.69	55.7
TraesCS2A01G581400.1	Wheat	cytosol	51.6	55.61
KRH08736	Soybean	endoplasmic reticulum	33.56	55.52
HORVU2Hr1G124270.22	Barley	cytosol, mitochondrion, nucleus	51.78	55.48
Zm00001d002876_P001	Maize	mitochondrion	52.12	55.29
CDX68076	Canola	cytosol	38.42	53.37
HORVU3Hr1G108180.1	Barley	mitochondrion	7.46	51.5
KRH30227	Soybean	cytosol	19.51	49.89
GSMUA_Achr8P00080_001	Banana	endoplasmic reticulum	40.24	49.63
GSMUA_Achr5P08220_001	Banana	cytosol	43.89	46.0
GSMUA_Achr4P00510_001	Banana	cytosol	36.95	44.33
GSMUA_Achr1P02140_001	Banana	cytosol	30.7	39.64
GSMUA_Achr5P11650_001	Banana	cytosol	30.62	36.39
GSMUA_Achr6P17690_001	Banana	cytosol	13.1	34.4
GSMUA_Achr3P19000_001	Banana	nucleus	12.84	32.96
GSMUA_Achr8P06920_001	Banana	cytosol	9.19	32.42
GSMUA_Achr10P...	Banana	mitochondrion	10.84	29.76
GSMUA_Achr7P20980_001	Banana	cytosol	37.12	29.46
GSMUA_Achr5P12060_001	Banana	mitochondrion	11.01	28.1
GSMUA_Achr2P10610_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	11.88	27.85
GSMUA_Achr6P29750_001	Banana	cytosol	9.45	27.46
GSMUA_Achr1P00100_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	11.54	27.03
GSMUA_Achr9P15560_001	Banana	cytosol	8.67	26.88
GSMUA_Achr10P...	Banana	cytosol	11.19	26.71
GSMUA_Achr9P02110_001	Banana	plastid	11.62	24.91
GSMUA_AchrUn_...	Banana	cytosol, plastid	11.45	24.58
GSMUA_AchrUn_...	Banana	cytosol	11.19	24.2

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	InterPro:BRX_N	InterPro:Brevis_radix_dom
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSMUA_AchrUn_randomG09300_001	EnsemblPlants:GSMUA_AchrUn_randomP09300_001
EnsemblPlants:GSMUA_AchrUn_randomT09300_001	InterPro:IPR000408	InterPro:IPR001849	InterPro:IPR009091	InterPro:IPR011993	InterPro:IPR013083
InterPro:IPR013591	InterPro:IPR017455	UniProt:M0U7P0	PFAM:PF00415	PFAM:PF01363	PFAM:PF08381
PFAM:PF13713	PFAM:PF16457	InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00633	ScanProsite:PS00626
PFscan:PS50012	PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF91	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI0002962BD4
InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

Putative Probable E3 ubiquitin-protein ligase HERC1 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG09300_001]

Coordinates

chrchrUn_random:+:43222677..43232560

Molecular Weight (calculated)

127831.0 Da

IEP (calculated)

8.141

GRAVY (calculated)

-0.531

Length

1153 amino acids

Sequence
(BLAST)

0001: MNDIEMYILV ALKKGTQLLK YGRKGKPKFY LFRLSNDEST LIWFSTSGER TLKLASVSRI ISGQRTSVFQ RYPRPDKDYL SFSLIYNDGK RSLDLICKDK
0101: VEVEVWFSGL KTLISAGQYG RPKIDGWSNG LYNDNRRRKE EGGRRKNRRQ WRKRRKDGER KDEDETVEEK EEKEKGRRGD AKSDLEVVVG HLHAHWIMPC
0201: FTTPEKWNNI YLHKEFACLE AHEKTFFLKA PRINHPIKNL SCFISGSCQP EASYRLFDSH EFASDNISNH SIGPTLDTSE DRLTSCGLQK IQSFEYPVYS
0301: ERSDVSNMHT KGASSDGIRI STSSVPSTSS HGSAPEDFDA SGDVYVWGEV ISDISARVSA DRNSNPSSAR TDVLLPKSLE SNLVLDIHHV ACGVRHAALV
0401: TRQGEVFTWG EESGGRLGHG VAADTVNPRL VESLSASNVD FVACGEFHTC AVTMSGELYT WGDGSYNAGL LGHGTDVCHW MPKRVSGILE GLQVSYVSCG
0501: VWHTALITTT GQLFSFGDGT FGVLGHGNRE SLLHPREVES LTGLKTMAVS CGVWHTAAVV EVIVTQSSAS SGKLFTWGDG DKHRLGHGDK EPQLEPTCVS
0601: SLIDFNFHKL ACGHSLTVGL TTSGHVFTMG STVYGQLGNP HSDGRLPCMV EDKLLGESVV EVASGSYHVA VLTARGEVYT WGRGANGRLG HGDLEDRKTP
0701: KMVEALKDRH VKHISCGSSF TAAICQHKWV SGTEQSQCSA CRQAFGFTRK KHNCYNCGLV HCHQCSSRKA LRAALSPNPG KPYRVCDTCY VKLTNSFDSG
0801: GFISKKIMKP RISGESKDRL DRLDTSLSKA LPSSNLDLVN NFDSKVSIEG KNSNSLSVTQ SPQVPSVLQL KSIAFNASTD VHQAVPRPAV KSTNRSRAVS
0901: PFSRKPSPPR STTPTPTMAG LSFSKSFSDN LKKTNDILNQ ELLRFHSEVD NLRQRCERLE FQLEKSEKKA QEATTLAMEE SAKSKAAKEV IKSLTAQLKE
1001: MAKRLPQGVY DTDPIKLMHL SNGSTDSHAI QQSDSSFGNL SSNGTSDFTC SNYLEDLSNV EHNGNGEMPV TITRSEDLDS PNSDSNQVEA EWIEQFEPGV
1101: YITLIALRDG TRELKRVRFS RRRFGEQQAE AWWSENAERV HDKYKFRGLN STL

Best Arabidopsis Sequence Match ( AT5G42140.1 )
(BLAST)

0001: MADLVSYGNV VRDIEQALIA LKKGAQLLKY GRKGKPKFCP FRLSNDETSL IWISNGGEKR LKLATVSKIV PGQRTAVFQR YLRPDKDYLS FSLIYSNRKR
0101: TLDLICKDKV EAEVWIAGLK ALISGQAGRS KIDGWSDGGL SIADSRDLTL SSPTNSSVCA SRDFNIADSP YNSTNFPRTS RTENSVSSER SHVASDSPNM
0201: LVRGTGSDAF RVSVSSVQSS SSHGSAPDDC DALGDVYIWG EVLCENVTKF GADKNIGYLG SRSDVLIPKP LESNVVLDVH HIACGVKHAA LVSRQGEVFT
0301: WGEASGGRLG HGMGKDVTGP QLIESLAATS IDFVACGEFH TCAVTMTGEI YTWGDGTHNA GLLGHGTDVS HWIPKRISGP LEGLQIASVS CGPWHTALIT
0401: STGQLFTFGD GTFGVLGHGD KETVFYPREV ESLSGLRTIA VACGVWHAAA IVEVIVTHSS SSVSSGKLFT WGDGDKSRLG HGDKEPRLKP TCVSALIDHT
0501: FHRVACGHSL TVGLTTSGKV YTMGSTVYGQ LGNPNADGKL PCLVEDKLTK DCVEEIACGA YHVAVLTSRN EVFTWGKGAN GRLGHGDVED RKAPTLVDAL
0601: KERHVKNIAC GSNFTAAICL HKWVSGTEQS QCSACRQAFG FTRKRHNCYN CGLVHCHSCS SKKSLKAALA PNPGKPYRVC DSCHSKLSKV SEANIDSRKN
0701: VMPRLSGENK DRLDKTEIRL AKSGIPSNID LIKQLDNRAA RQGKKADTFS LVRTSQTPLT QLKDALTNVA DLRRGPPKPA VTPSSSRPVS PFSRRSSPPR
0801: SVTPIPLNVG LGFSTSIAES LKKTNELLNQ EVVRLRAQAE SLRHRCEVQE FEVQKSVKKV QEAMSLAAEE SAKSEAAKEV IKSLTAQVKD IAALLPPGAY
0901: EAETTRTANL LNGFEQNGFH FTNANGQRQS RSDSMSDTSL ASPLAMPARS MNGLWRNSQS PRNTDASMGE LLSEGVRISN GFSEDGRNSR SSAASASNAS
1001: QVEAEWIEQY EPGVYITLLA LGDGTRDLKR VRFSRRRFRE QQAETWWSEN RERVYEKYNI RGTDRSSVAT SPISQSQF

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain [Source:TAIR;Acc:AT5G42140]
SUBAcon: [endoplasmic reticulum,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.