Factsheet for GSMUA_Achr8P00080_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
endoplasmic reticulum 3
extracellular 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P08220_001	Banana	cytosol	86.63	73.64
HORVU0Hr1G028990.2	Barley	cytosol	31.02	73.6
KXG34127	Sorghum	cytosol	64.71	65.62
Os05t0384800-01	Rice	cytosol	75.72	65.19
Zm00001d042074_P001	Maize	cytosol	75.4	64.62
VIT_06s0009g03550.t01	Wine grape	nucleus	75.51	63.78
TraesCS1A01G240600.2	Wheat	cytosol	74.76	63.72
Solyc12g099740.1.1	Tomato	nucleus	69.73	63.61
TraesCS1D01G240700.1	Wheat	cytosol	74.33	63.59
TraesCS1B01G252700.2	Wheat	cytosol	74.44	63.56
KRH73555	Soybean	nucleus	74.65	63.0
VIT_13s0067g03380.t01	Wine grape	endoplasmic reticulum, extracellular	73.8	62.84
KRG99075	Soybean	nucleus	74.01	62.57
Zm00001d011851_P001	Maize	cytosol	74.76	62.52
KRH14571	Soybean	nucleus	74.01	62.51
TraesCS3B01G543500.1	Wheat	cytosol	72.51	62.26
TraesCS3D01G489600.1	Wheat	cytosol	72.41	62.17
HORVU3Hr1G107820.4	Barley	endoplasmic reticulum	72.83	61.97
Solyc11g065120.1.1	Tomato	cytosol	74.76	61.91
HORVU1Hr1G056870.2	Barley	cytosol, endoplasmic reticulum, nucleus	74.44	61.87
KRH45937	Soybean	nucleus	73.05	61.59
CDX91165	Canola	nucleus	69.84	60.86
CDX85690	Canola	nucleus	69.63	60.84
Bra008895.1-P	Field mustard	nucleus	69.09	60.71
AT5G12350.1	Thale cress	nucleus	69.63	60.56
CDX69686	Canola	nucleus	69.09	60.37
CDX97187	Canola	nucleus	67.91	60.02
Os01t0952300-00	Rice	cytosol	72.94	59.67
Bra006504.1-P	Field mustard	cytosol	70.27	59.56
CDX92532	Canola	nucleus	70.27	58.98
AT5G19420.2	Thale cress	mitochondrion	71.44	58.65
CDY13998	Canola	nucleus	69.84	58.51
Bra023374.1-P	Field mustard	nucleus	69.41	58.36
CDX88891	Canola	cytosol, mitochondrion, nucleus	70.27	57.89
Bra002235.1-P	Field mustard	nucleus	68.88	57.81
CDX70876	Canola	cytosol	68.66	57.58
GSMUA_Achr4P00510_001	Banana	cytosol	54.65	53.17
GSMUA_Achr2P20470_001	Banana	endoplasmic reticulum, plasma membrane	48.34	45.8
GSMUA_Achr8P07850_001	Banana	cytosol	51.55	43.62
GSMUA_Achr6P13030_001	Banana	endoplasmic reticulum	45.35	43.31
GSMUA_AchrUn_...	Banana	nucleus	49.63	40.24
GSMUA_Achr1P02140_001	Banana	cytosol	37.11	38.86
GSMUA_Achr5P11650_001	Banana	cytosol	38.4	37.01
GSMUA_Achr7P20980_001	Banana	cytosol	53.8	34.62
GSMUA_Achr6P17690_001	Banana	cytosol	15.83	33.71
GSMUA_Achr3P19000_001	Banana	nucleus	15.4	32.07
GSMUA_Achr8P06920_001	Banana	cytosol	10.37	29.66
GSMUA_Achr9P15560_001	Banana	cytosol	11.44	28.76
GSMUA_Achr10P...	Banana	mitochondrion	12.83	28.57
GSMUA_Achr6P29750_001	Banana	cytosol	11.66	27.46
GSMUA_Achr5P12060_001	Banana	mitochondrion	13.05	26.99
GSMUA_Achr10P...	Banana	cytosol	13.16	25.47
GSMUA_Achr1P00100_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	12.83	24.39
GSMUA_Achr2P10610_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	12.41	23.58
GSMUA_Achr9P02110_001	Banana	plastid	13.26	23.05
GSMUA_AchrUn_...	Banana	cytosol, plastid	12.62	21.97
GSMUA_AchrUn_...	Banana	cytosol	11.98	21.01

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	InterPro:BRX_N	InterPro:Brevis_radix_dom
ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr8G00080_001	EnsemblPlants:GSMUA_Achr8P00080_001
EnsemblPlants:GSMUA_Achr8T00080_001	InterPro:IPR000408	InterPro:IPR001849	InterPro:IPR009091	InterPro:IPR011993	InterPro:IPR013083
InterPro:IPR013591	InterPro:IPR017455	UniProt:M0TLB0	PFAM:PF00415	PFAM:PF01363	PFAM:PF08381
PFAM:PF13713	InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50003
PFscan:PS50012	PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF212	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI000294A9BE
InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

Putative Probable E3 ubiquitin-protein ligase HERC1 [Source:GMGC_GENE;Acc:GSMUA_Achr8G00080_001]

Coordinates

chr8:-:51853..68026

Molecular Weight (calculated)

101675.0 Da

IEP (calculated)

8.336

GRAVY (calculated)

-0.414

Length

935 amino acids

Sequence
(BLAST)

001: MNMCTYKEFL EITCLILLSA DESVLIWFSG KEEKHVKLSH VARIMPGQRT AIFQRYRQPE KERQSFSLIY NERSLDLICK DKDEAEVWFA GLKTLISRSH
101: YRRWRTESRS DGVSSGTNSP RTYTRRSSPL NSPFGSSDSM QKSFFPSDSV TESLHSLSSG CSDSINGHTR VIATDVFRVS LSSAVSSSSQ GSGHDDGDAL
201: GDVFIWDVQN VSCGGRHAAL VTKQGEIYTW GEESGGRLGH GVKTDVSQPR LVDALVNMNI ELVACGEHHT CAVTLSGDLY TWGDGTSTLG LLGNGNEMSH
301: WLPKMVSGPL EGIHVSSVSC GPWHTSVVTS SGQLFTFGDG TFGVLGHGDR RSISVPREVG SLRGLRTVRA ACGVWHTAAV VEVISGNSSS SNCSSGKLFT
401: WGDGDKGRLG HGDKENRLVP TCVAALVEPN FCQVACGHSL TVSLTTSGHV YTMGSAVYGQ LGNPQSDGKL PVRVEGKLLK NFVEEISCGA YHVAVLTSRT
501: EVYTWGKGAN GRLGHRDTDD RNSPTLVEAL KDKQVRNVVC GTNFTAAICI HKWVSGVDQS MCSGCCLPFN FKRKRHNCYN CALVFCHSCS NKKSLRASMA
601: PNPHKPYRVC DNCFIKLSKP LETDSSSHSA ASKRGNMIQG FSDMIEEDKL DPRSNFFSAS VPGSRIVSRA TSPVSRRASP PRSTTPNPTL QGLTSLRTIL
701: DGSKSATDSI SQEVLKLRAQ VANLTYKAQL QEVVLERTTK QLKEAISVAG EEAAKCKAAK EVIKSLTAQL KDMAERLPVG AAENSELSSS ASFNTSLDSS
801: SFSDATAEKL SSLLTSREKD ANGSSEVLGS NGQSTIGSRN NLGTPVSRNG SKVIDADPNH ETEWVEQDEP GVYITLTSLP EGARDLKRVR FSRKRFSEKQ
901: AEQWWAENRA RVYEQYSVRT VNRSAPSVGN SKRSD

Best Arabidopsis Sequence Match ( AT5G19420.2 )
(BLAST)

0001: MWSGFRDCTR NGRMTPSDLS RAGPVTRDIE QLKIELYSTF GVSKLDSSYI LENKNALHAI TALKKGAYLL KYGRRGKPKF CPFRLSNDES VLIWFSGKEE
0101: KHLKLSHVSR IISGQRTPIF QRYPRPEKEY QSFSLIYDER SLDLICKDKD EAEVWFSGLK ALISRCHQRK WRTESRSDGT PSEANSPRTY TRRSSPLHSP
0201: FSSNESFQKE GSNHLRLHSP YESPPKNGVD KAFSDMSLYA VPPKGFFPPG SATMSVHSLS SGGSDTLHGH MKGMGMDAFR VSLSSAISSS SHGSGHDDGD
0301: TLGDVFMWGE GIGEGVLGGG NHRVGSSLEI KMDSLLPKAL ESTIVLDVQN IACGGQHAVL VTKQGESFSW GEESEGRLGH GVDSNVQHPK LIDALNTTNI
0401: ELVACGEYHS CAVTLSGDLY TWGKGDFGIL GHGNEVSHWV PKRVNFLMEG IHVSSIACGP YHTAVVTSAG QLFTFGDGTF GVLGHGDRKS VFIPREVDSL
0501: KGLRTVRAAC GVWHTAAVVE VMVGSSSSSN CSSGKLFTWG DGDKSRLGHG DKEPKLVPTC VAALVEPNFC QVACGHSLTV ALTTSGHVYT MGSPVYGQLG
0601: NPHADGKVPT RVDGKLHKSF VEEIACGAYH VAVLTSRTEV YTWGKGSNGR LGHGDADDRN SPTLVESLKD KQVKSIACGS NFTAAVCLHK WASGMDQSMC
0701: SGCRQPFNFK RKRHNCYNCG LVFCHSCSNK KSLKACMAPN PNKPYRVCDR CFNKLKKAME TDPSSHSSLS RRESVNQGSD AIDRDEKLDT RSDGQLARFS
0801: LLEPMRQVDS RSKKNKKYEF NSSRVSPIPS GGSHRGSLNI TKSFNPTFGS SKKFFSASVP GSRIASRATS PISRRPSPPR STTPTPTLSG LTTPKIVVDD
0901: TKRSNDNLSQ EVVMLRSQVE NLTRKAQLQE VELERTTKQL KEALAIASEE SARCKAAKEV IKSLTAQLKD MAERLPVGSA RTVKSPSLNS FGSSPDYAAP
1001: SSNTLNRPNS RETDSDSLTT VPMFSNGTST PVFDSGSYRQ QANHAAEAIN RISTRSKESE PRNENEWVEQ DEPGVYITLT ALAGGARDLK RVRFSRKRFS
1101: EKQAEEWWAE NRGRVYEQYN VRIVVDKSSV GVGSEDLGH

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4K148]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.