Factsheet for Os01t0952300-00

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plastid
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042074_P001	Maize	cytosol	84.08	88.08
KXG34127	Sorghum	cytosol	70.78	87.74
Zm00001d011851_P001	Maize	cytosol	83.55	85.42
Os05t0384800-01	Rice	cytosol	80.31	84.53
TraesCS3B01G543500.1	Wheat	cytosol	80.4	84.39
TraesCS3D01G489600.1	Wheat	cytosol	80.23	84.21
HORVU3Hr1G107820.4	Barley	endoplasmic reticulum	79.27	82.44
GSMUA_Achr5P08220_001	Banana	cytosol	71.83	74.64
GSMUA_Achr8P00080_001	Banana	endoplasmic reticulum	59.67	72.94
VIT_06s0009g03550.t01	Wine grape	nucleus	70.52	72.81
KRH14571	Soybean	nucleus	70.43	72.72
KRH73555	Soybean	nucleus	70.25	72.47
AT5G12350.1	Thale cress	nucleus	67.28	71.53
Solyc11g065120.1.1	Tomato	cytosol	70.6	71.48
KRG99075	Soybean	nucleus	69.03	71.34
CDX85690	Canola	nucleus	66.4	70.93
KRH45937	Soybean	nucleus	68.68	70.78
CDX91165	Canola	nucleus	66.14	70.46
VIT_13s0067g03380.t01	Wine grape	endoplasmic reticulum, extracellular	67.63	70.4
Bra008895.1-P	Field mustard	nucleus	65.44	70.3
Solyc12g099740.1.1	Tomato	nucleus	62.9	70.15
CDX69686	Canola	nucleus	65.62	70.09
Bra006504.1-P	Field mustard	cytosol	67.28	69.72
CDX97187	Canola	nucleus	64.39	69.57
Bra023374.1-P	Field mustard	nucleus	66.49	68.35
CDX92532	Canola	nucleus	66.32	68.04
AT5G19420.2	Thale cress	mitochondrion	67.8	68.04
CDX88891	Canola	cytosol, mitochondrion, nucleus	67.54	68.02
CDX70876	Canola	cytosol	66.05	67.71
CDY13998	Canola	nucleus	65.79	67.38
Bra002235.1-P	Field mustard	nucleus	65.0	66.7
Os01t0964800-01	Rice	mitochondrion	27.82	54.92
Os05t0106700-00	Rice	mitochondrion	37.36	45.43
Os04t0686200-01	Rice	plasma membrane	41.99	45.41
Os05t0545200-00	Rice	cytosol	38.85	43.79
Os01t0700200-01	Rice	cytosol	39.55	43.3
Os02t0554100-01	Rice	cytosol, plasma membrane	14.17	35.76
Os04t0583700-00	Rice	cytosol	32.28	35.69
Os04t0435700-01	Rice	plasma membrane	14.0	35.32
Os11t0545800-01	Rice	mitochondrion	11.46	30.82
Os09t0560450-01	Rice	mitochondrion	11.55	30.21
Os08t0430700-02	Rice	cytosol	9.71	28.1
Os01t0777800-01	Rice	cytosol	9.71	27.68
Os04t0226400-01	Rice	plastid	5.07	26.73
Os03t0599600-01	Rice	mitochondrion	4.2	25.26
Os12t0284000-01	Rice	cytosol	11.72	25.09
Os02t0597000-01	Rice	cytosol	11.37	24.21
Os02t0684900-01	Rice	cytosol	7.96	21.11
Os08t0430600-01	Rice	plastid	2.62	18.87
Os09t0560500-01	Rice	mitochondrion, plastid	1.31	7.21

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	UniProt:A0A0P0VD31	ProteinID:BAS76253.1
InterPro:BRX_N	InterPro:Brevis_radix_dom	ncoils:Coil	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0043531	GO:GO:0046872	InterPro:IPR000408	InterPro:IPR009091	InterPro:IPR011993	InterPro:IPR013083
InterPro:IPR013591	InterPro:IPR017455	EnsemblPlantsGene:Os01g0952300	EnsemblPlants:Os01t0952300-00	PFAM:PF00415	PFAM:PF01363
PFAM:PF08381	PFAM:PF13713	PFAM:PF16627	InterPro:PH-like_dom_sf	PRINTS:PR00633	ScanProsite:PS00626
PFscan:PS50012	PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF212	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI0003939630
InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

Similar to Ran GTPase binding / chromatin binding / zinc ion binding. (Os01t0952300-00)

Coordinates

chr1:-:41925865..41932899

Molecular Weight (calculated)

123872.0 Da

IEP (calculated)

9.051

GRAVY (calculated)

-0.392

Length

1143 amino acids

Sequence
(BLAST)

0001: MSDASSDLAG GRAAPPVERD IEQAITALKK GAYLLKYGRR GKPKFCPFRL SNDESVLIWF SGKEEKHLRL SQVSRIVPGQ RTAIFQRYPR PEKECQSFSL
0101: ISHDRSLDII CKDKDEAEVW FAGLKTLISH SHQRKWRTES RSDIISSGAT SPRTYTRRSS PLSSPFSSND SVHKDGSDHY RLRSPFGSPP KNALDKAFSD
0201: VVLYAVPPKG FFPSDSNAGS VHSMSSGHSD NTNGHPRGIP MDAFRVSYSS AISSSSHGSG HDDGDALGDV FIWGEGTGEG ILGGGSSRVG SSSSAKMDYL
0301: VPKPLEFAVR LDVQNISCGG RHAALVTKQG EIYSWGEESG GRLGHGVDCD VAQPKLIDSL AHMNIELVAC GEYHTCAVTL SGDLYTWGDG TFKFGLLGHG
0401: NDVSHWVPKR VDGPLEGIHV SSISCGPWHT ALVTSAGQLF TFGDGSFGVL GHGDRASLSV PREVESLKGL RTVRAACGVW HTAAVVEVMV GNSSSSNCSS
0501: GKIFTWGDGD KGRLGHGDKD SRFVPTCVAA LVEPNFCQVA CGHCLTVALT TSGHVYTMGS AVYGQLGNPQ ADGLLPVRVE GKLHKNFVEE ISCGAYHVAV
0601: LTSRTEVYTW GKGANGRLGH GGTDDKNTPT LVEALKDKQV RSVVCGINFT AAICIHKWVS GSDQSMCSGC RQPFNLRRKR HNCYNCALVF CHSCSSKKSL
0701: KASLAPNPNK PYRVCDSCYS KLTKGLETDT NSSTKRGTVV QGFSETNEEE LETRSNTQLS RLSSMESFKN MDSRYSKKNK KFEFNSTRVS PVPNGSSHWS
0801: GLNISRSFNP VFGSSKKFFS ASVPGSRIVS RATSPVSRRT SPPRSTTPTP TLGGLTSPRV IANDAKPTND SLSHEVLNLR SQVENLTRKS HLLEVELERT
0901: TKQLKEAIVI AGEETAKCKA AKEVIKSLTA QVRLHFCELA GMAERLPGGV TKNSKLPPLS GFPMPSELSS MATESLGSPS SVGEQISNGP NGLLASNGPS
1001: SVRIKAGHPE VGKNGSRLPE AESCHEAEWV EQDEPGVYIT LTALPGGARD LKRVRFRYIL LILCKNQSFV WFSFSLLVCM NPAGRDSARP RQNNGGRRTG
1101: QGYTSITMFG WLKNQPPVSI MRLHLGDIRF DIWTKGELRS FTM

Best Arabidopsis Sequence Match ( AT5G19420.1 )
(BLAST)

0001: MSRNGRMTPS DLSRAGPVTR DIEQAITALK KGAYLLKYGR RGKPKFCPFR LSNDESVLIW FSGKEEKHLK LSHVSRIISG QRTPIFQRYP RPEKEYQSFS
0101: LIYDERSLDL ICKDKDEAEV WFSGLKALIS RCHQRKWRTE SRSDGTPSEA NSPRTYTRRS SPLHSPFSSN ESFQKEGSNH LRLHSPYESP PKNGVDKAFS
0201: DMSLYAVPPK GFFPPGSATM SVHSLSSGGS DTLHGHMKGM GMDAFRVSLS SAISSSSHGS GHDDGDTLGD VFMWGEGIGE GVLGGGNHRV GSSLEIKMDS
0301: LLPKALESTI VLDVQNIACG GQHAVLVTKQ GESFSWGEES EGRLGHGVDS NVQHPKLIDA LNTTNIELVA CGEYHSCAVT LSGDLYTWGK GDFGILGHGN
0401: EVSHWVPKRV NFLMEGIHVS SIACGPYHTA VVTSAGQLFT FGDGTFGVLG HGDRKSVFIP REVDSLKGLR TVRAACGVWH TAAVVEVMVG SSSSSNCSSG
0501: KLFTWGDGDK SRLGHGDKEP KLVPTCVAAL VEPNFCQVAC GHSLTVALTT SGHVYTMGSP VYGQLGNPHA DGKVPTRVDG KLHKSFVEEI ACGAYHVAVL
0601: TSRTEVYTWG KGSNGRLGHG DADDRNSPTL VESLKDKQVK SIACGSNFTA AVCLHKWASG MDQSMCSGCR QPFNFKRKRH NCYNCGLVFC HSCSNKKSLK
0701: ACMAPNPNKP YRVCDRCFNK LKKAMETDPS SHSSLSRRES VNQGSDAIDR DEKLDTRSDG QLARFSLLEP MRQVDSRSKK NKKYEFNSSR VSPIPSGGSH
0801: RGSLNITKSF NPTFGSSKKF FSASVPGSRI ASRATSPISR RPSPPRSTTP TPTLSGLTTP KIVVDDTKRS NDNLSQEVVM LRSQVENLTR KAQLQEVELE
0901: RTTKQLKEAL AIASEESARC KAAKEVIKSL TAQLKDMAER LPVGSARTVK SPSLNSFGSS PDYAAPSSNT LNRPNSRETD SDSLTTVPMF SNGTSTPVFD
1001: SGSYRQQANH AAEAINRIST RSKESEPRNE NEWVEQDEPG VYITLTALAG GARDLKRVRF SRKRFSEKQA EEWWAENRGR VYEQYNVRIV VDKSSVGVGS
1101: EDLGH

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4K148]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.