Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 2
- mitochondrion 3
- nucleus 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G020400.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 82.77 | 85.78 |
| HORVU1Hr1G002740.1 | Barley | cytosol, mitochondrion, nucleus, plastid | 82.66 | 85.67 |
| TraesCS1B01G024400.1 | Wheat | cytosol, mitochondrion, nucleus | 82.45 | 85.45 |
| TraesCS1D01G019900.1 | Wheat | cytosol, mitochondrion, nucleus, plastid | 82.45 | 85.26 |
| EES18851 | Sorghum | cytosol, plastid | 80.32 | 82.42 |
| Zm00001d035723_P001 | Maize | cytosol, mitochondrion, nucleus, plastid | 79.79 | 81.79 |
| Os01t0964800-01 | Rice | mitochondrion | 45.96 | 74.61 |
| KRH08736 | Soybean | endoplasmic reticulum | 43.62 | 58.82 |
| GSMUA_Achr6P13030_001 | Banana | endoplasmic reticulum | 58.62 | 56.28 |
| CDY48550 | Canola | cytosol | 55.85 | 53.57 |
| KRG91629 | Soybean | cytosol | 61.49 | 52.64 |
| VIT_18s0166g00210.t01 | Wine grape | cytosol | 62.87 | 52.35 |
| KRH30227 | Soybean | cytosol | 25.0 | 52.11 |
| KRH35179 | Soybean | cytosol | 62.02 | 52.05 |
| GSMUA_Achr2P20470_001 | Banana | endoplasmic reticulum, plasma membrane | 54.47 | 51.87 |
| PGSC0003DMT400002081 | Potato | cytosol | 61.49 | 51.33 |
| Solyc04g071040.2.1 | Tomato | cytosol | 61.38 | 51.24 |
| AT5G42140.2 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 58.19 | 50.74 |
| CDY47138 | Canola | cytosol | 56.17 | 50.43 |
| KRH70333 | Soybean | cytosol | 59.79 | 50.18 |
| Bra016214.1-P | Field mustard | cytosol | 55.85 | 50.0 |
| CDY11586 | Canola | cytosol | 55.85 | 49.86 |
| AT1G76950.1 | Thale cress | cytosol | 58.3 | 49.68 |
| KRH08750 | Soybean | cytosol | 33.51 | 49.45 |
| Bra003698.1-P | Field mustard | mitochondrion | 56.28 | 49.12 |
| CDX87557 | Canola | cytosol | 54.79 | 48.0 |
| Bra015708.1-P | Field mustard | cytosol | 54.79 | 47.95 |
| CDX88324 | Canola | cytosol | 54.04 | 47.88 |
| Os04t0686200-01 | Rice | plasma membrane | 52.98 | 47.11 |
| KRH30228 | Soybean | cytosol | 20.11 | 46.44 |
| CDX68076 | Canola | cytosol | 38.19 | 43.25 |
| Os05t0545200-00 | Rice | cytosol | 44.79 | 41.52 |
| Os05t0384800-01 | Rice | cytosol | 45.53 | 39.41 |
| Os01t0700200-01 | Rice | cytosol | 43.51 | 39.18 |
| Os01t0952300-00 | Rice | cytosol | 45.43 | 37.36 |
| Os04t0435700-01 | Rice | plasma membrane | 14.68 | 30.46 |
| CDY70949 | Canola | cytosol | 11.28 | 29.94 |
| Os02t0554100-01 | Rice | cytosol, plasma membrane | 14.15 | 29.36 |
| Os04t0583700-00 | Rice | cytosol | 32.13 | 29.21 |
| Os08t0430700-02 | Rice | cytosol | 11.91 | 28.35 |
| Os11t0545800-01 | Rice | mitochondrion | 12.77 | 28.24 |
| Os09t0560450-01 | Rice | mitochondrion | 12.55 | 27.0 |
| Os03t0599600-01 | Rice | mitochondrion | 5.43 | 26.84 |
| Os01t0777800-01 | Rice | cytosol | 10.74 | 25.19 |
| Os04t0226400-01 | Rice | plastid | 5.53 | 23.96 |
| Os02t0684900-01 | Rice | cytosol | 10.96 | 23.9 |
| Os12t0284000-01 | Rice | cytosol | 11.49 | 20.22 |
| Os02t0597000-01 | Rice | cytosol | 10.96 | 19.18 |
| Os08t0430600-01 | Rice | plastid | 3.19 | 18.87 |
| Os09t0560500-01 | Rice | mitochondrion, plastid | 1.81 | 8.17 |
Protein Annotations
| Gene3D:2.130.10.30 | Gene3D:3.30.40.10 | MapMan:35.1 | UniProt:A0A0P0WH96 | ProteinID:BAS91880.1 | InterPro:BRX_N |
| InterPro:Brevis_radix_dom | ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000408 |
| InterPro:IPR009091 | InterPro:IPR013083 | InterPro:IPR013591 | InterPro:IPR017455 | EnsemblPlantsGene:Os05g0106700 | EnsemblPlants:Os05t0106700-00 |
| PFAM:PF00415 | PFAM:PF01363 | PFAM:PF08381 | PFAM:PF13713 | PRINTS:PR00633 | ScanProsite:PS00626 |
| PFscan:PS50012 | PFscan:PS50178 | PFscan:PS51514 | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF199 | InterPro:RCC1/BLIP-II |
| InterPro:Reg_chr_condens | SMART:SM00064 | SUPFAM:SSF50985 | SUPFAM:SSF57903 | UniParc:UPI000393C3D0 | InterPro:Znf_FYVE |
| InterPro:Znf_FYVE-rel | InterPro:Znf_FYVE_PHD | InterPro:Znf_RING/FYVE/PHD | SEG:seg | : | : |
Description
Similar to PRAF1; Ran GTPase binding / chromatin binding / zinc ion binding. (Os05t0106700-00)
Coordinates
chr5:+:362367..365961
Molecular Weight (calculated)
102234.0 Da
IEP (calculated)
8.166
GRAVY (calculated)
-0.399
Length
940 amino acids
Sequence
(BLAST)
(BLAST)
001: QYRVIYGQYY LQFLVTWRSN VTNMHTRGAS SDVLRASISS APSTSSHGSA QDDCDSLGDV YVWGEVFCEN SVRVGSDTII RSTEKTDFLL PKPLESRLVL
101: DVYHVDCGVR HAALVTRNGD VFTWGEDSGG RLGHGTREDS VHPRLVESLA ACNVDFVACG EFHTCAVTTT GELYTWGDGT HNVGLLGHGT DAGHWIPKRI
201: SGALDGLPVA YVSCGTWHTA LITSMGQLFT FGDGSFGVLG HGNLTSISCP KEVESLSGLK TIAVACGVWH TAAIVEVIVT HSSSSVSAGK LFTWGDGDKH
301: RLGHGDKESR LKPTCVASLI DYDFYRVACG HSLTVCLTTS GKVLSMGNSV YGQLGNPNSD GRLPCLVEDR IAGEHVLQVA CGSYHVAVLT GRSEVFTWGK
401: GANGRLGHGD IEDRKVPTQV EALKDRAVRH IACGANFTAA ICLHKWVSGA DQSQCSSCQQ PFGFTRKRHN CYNCGLVHCN ACTSRKALRA ALAPNPGKPY
501: RVCDSCFLKL KNALDSDSFN KRKDIVSHLA GESNGDTKAS KTILSSNMDI IRSLDSKAAR QGKKTDALSF LRTPQVSSLL QLRDIALSGS ADMNRSVPRA
601: VRTSAVRSVT TSRAVSPFSR KSSPPRSTTP VPTTHGLSFS KSATDNLAKT NELLNQEIDR LHAQVDNLRH RCEHQEVELH KSAKKVQEAM TLVAEESAKS
701: KAAKEVIKSL TAQLKDMAER IPPEQGTYDV SEAKPVHVPN GIDSHIAIYS SINVAHQPQN ELLNASNAQS LNSGRSLHPN GISSQHRLLG NATEASEGSA
801: QSHRITSPCK LDVPHRRAHS NSDDMLTASH RGDDNVSIDA MSLQNGEDGY KPRGTVSSIS SSQVQAEWIE QYEPGVYITL TTLLDGTRDL KRVRFSRRRF
901: GEHQAEKWWN ENREKVYERY NVRSSERVSS SSAASTRSAY
101: DVYHVDCGVR HAALVTRNGD VFTWGEDSGG RLGHGTREDS VHPRLVESLA ACNVDFVACG EFHTCAVTTT GELYTWGDGT HNVGLLGHGT DAGHWIPKRI
201: SGALDGLPVA YVSCGTWHTA LITSMGQLFT FGDGSFGVLG HGNLTSISCP KEVESLSGLK TIAVACGVWH TAAIVEVIVT HSSSSVSAGK LFTWGDGDKH
301: RLGHGDKESR LKPTCVASLI DYDFYRVACG HSLTVCLTTS GKVLSMGNSV YGQLGNPNSD GRLPCLVEDR IAGEHVLQVA CGSYHVAVLT GRSEVFTWGK
401: GANGRLGHGD IEDRKVPTQV EALKDRAVRH IACGANFTAA ICLHKWVSGA DQSQCSSCQQ PFGFTRKRHN CYNCGLVHCN ACTSRKALRA ALAPNPGKPY
501: RVCDSCFLKL KNALDSDSFN KRKDIVSHLA GESNGDTKAS KTILSSNMDI IRSLDSKAAR QGKKTDALSF LRTPQVSSLL QLRDIALSGS ADMNRSVPRA
601: VRTSAVRSVT TSRAVSPFSR KSSPPRSTTP VPTTHGLSFS KSATDNLAKT NELLNQEIDR LHAQVDNLRH RCEHQEVELH KSAKKVQEAM TLVAEESAKS
701: KAAKEVIKSL TAQLKDMAER IPPEQGTYDV SEAKPVHVPN GIDSHIAIYS SINVAHQPQN ELLNASNAQS LNSGRSLHPN GISSQHRLLG NATEASEGSA
801: QSHRITSPCK LDVPHRRAHS NSDDMLTASH RGDDNVSIDA MSLQNGEDGY KPRGTVSSIS SSQVQAEWIE QYEPGVYITL TTLLDGTRDL KRVRFSRRRF
901: GEHQAEKWWN ENREKVYERY NVRSSERVSS SSAASTRSAY
0001: MADLVSYGNV VRDIEQALIA LKKGAQLLKY GRKGKPKFCP FRLSNDETSL IWISNGGEKR LKLATVSKIV PGQRTAVFQR YLRPDKDYLS FSLIYSNRKR
0101: TLDLICKDKV EAEVWIAGLK ALISGQAGRS KIDGWSDGGL SIADSRDLTL SSPTNSSVCA SRDFNIADSP YNSTNFPRTS RTENSVSSER SHVASDSPNM
0201: LVRGTGSDAF RVSVSSVQSS SSHGSAPDDC DALGDVYIWG EVLCENVTKF GADKNIGYLG SRSDVLIPKP LESNVVLDVH HIACGVKHAA LVSRQGEVFT
0301: WGEASGGRLG HGMGKDVTGP QLIESLAATS IDFVACGEFH TCAVTMTGEI YTWGDGTHNA GLLGHGTDVS HWIPKRISGP LEGLQIASVS CGPWHTALIT
0401: STGQLFTFGD GTFGVLGHGD KETVFYPREV ESLSGLRTIA VACGVWHAAA IVEVIVTHSS SSVSSGKLFT WGDGDKSRLG HGDKEPRLKP TCVSALIDHT
0501: FHRVACGHSL TVGLTTSGKV YTMGSTVYGQ LGNPNADGKL PCLVEDKLTK DCVEEIACGA YHVAVLTSRN EVFTWGKGAN GRLGHGDVED RKAPTLVDAL
0601: KERHVKNIAC GSNFTAAICL HKWVSGTEQS QCSACRQAFG FTRKRHNCYN CGLVHCHSCS SKKSLKAALA PNPGKPYRVC DSCHSKLSKV SEANIDSRKN
0701: VMPRLSGENK DRLDKTEIRL AKSGIPSNID LIKQLDNRAA RQGKKADTFS LVRTSQTPLT QLKDALTNVA DLRRGPPKPA VTPSSSRPVS PFSRRSSPPR
0801: SVTPIPLNVG LGFSTSIAES LKKTNELLNQ EVVRLRAQAE SLRHRCEVQE FEVQKSVKKV QEAMSLAAEE SAKSEAAKEV IKSLTAQVKD IAALLPPGAY
0901: EAETTRTANL LNGFEQNGFH FTNANGQRQS RSDSMSDTSL ASPLAMPARS MNGLWRNSQS PRNTDASMGE LLSEGVRISN GFSEDGRNSR SSAASASNAS
1001: QVEAEWIEQY EPGVYITLLA LGDGTRDLKR VRFSRRRFRE QQAETWWSEN RERVYEKYNI RGTDRSSVAT SPISQSQF
0101: TLDLICKDKV EAEVWIAGLK ALISGQAGRS KIDGWSDGGL SIADSRDLTL SSPTNSSVCA SRDFNIADSP YNSTNFPRTS RTENSVSSER SHVASDSPNM
0201: LVRGTGSDAF RVSVSSVQSS SSHGSAPDDC DALGDVYIWG EVLCENVTKF GADKNIGYLG SRSDVLIPKP LESNVVLDVH HIACGVKHAA LVSRQGEVFT
0301: WGEASGGRLG HGMGKDVTGP QLIESLAATS IDFVACGEFH TCAVTMTGEI YTWGDGTHNA GLLGHGTDVS HWIPKRISGP LEGLQIASVS CGPWHTALIT
0401: STGQLFTFGD GTFGVLGHGD KETVFYPREV ESLSGLRTIA VACGVWHAAA IVEVIVTHSS SSVSSGKLFT WGDGDKSRLG HGDKEPRLKP TCVSALIDHT
0501: FHRVACGHSL TVGLTTSGKV YTMGSTVYGQ LGNPNADGKL PCLVEDKLTK DCVEEIACGA YHVAVLTSRN EVFTWGKGAN GRLGHGDVED RKAPTLVDAL
0601: KERHVKNIAC GSNFTAAICL HKWVSGTEQS QCSACRQAFG FTRKRHNCYN CGLVHCHSCS SKKSLKAALA PNPGKPYRVC DSCHSKLSKV SEANIDSRKN
0701: VMPRLSGENK DRLDKTEIRL AKSGIPSNID LIKQLDNRAA RQGKKADTFS LVRTSQTPLT QLKDALTNVA DLRRGPPKPA VTPSSSRPVS PFSRRSSPPR
0801: SVTPIPLNVG LGFSTSIAES LKKTNELLNQ EVVRLRAQAE SLRHRCEVQE FEVQKSVKKV QEAMSLAAEE SAKSEAAKEV IKSLTAQVKD IAALLPPGAY
0901: EAETTRTANL LNGFEQNGFH FTNANGQRQS RSDSMSDTSL ASPLAMPARS MNGLWRNSQS PRNTDASMGE LLSEGVRISN GFSEDGRNSR SSAASASNAS
1001: QVEAEWIEQY EPGVYITLLA LGDGTRDLKR VRFSRRRFRE QQAETWWSEN RERVYEKYNI RGTDRSSVAT SPISQSQF
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain [Source:TAIR;Acc:AT5G42140]
SUBAcon: [endoplasmic reticulum,plastid,cytosol]
SUBAcon: [endoplasmic reticulum,plastid,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.