Factsheet for GSMUA_Achr6P13030_001

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 2
extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
peroxisome 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	plastid
iPSORT:	secretory
MultiLoc:	peroxisome
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr2P20470_001	Banana	endoplasmic reticulum, plasma membrane	74.87	74.27
KRH08736	Soybean	endoplasmic reticulum	45.25	63.56
Zm00001d006773_P001	Maize	cytosol	25.74	62.53
KXG34192	Sorghum	cytosol	56.59	60.75
Os01t0964800-01	Rice	mitochondrion	35.75	60.45
Zm00001d011805_P001	Maize	cytosol	55.77	59.87
HORVU1Hr1G002740.1	Barley	cytosol, mitochondrion, nucleus, plastid	55.26	59.65
TraesCS1B01G024400.1	Wheat	cytosol, mitochondrion, nucleus	54.95	59.32
TraesCS1A01G020400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	54.85	59.21
HORVU3Hr1G112690.2	Barley	cytosol, plastid	54.85	59.14
TraesCS1D01G019900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	54.85	59.08
Zm00001d035723_P001	Maize	cytosol, mitochondrion, nucleus, plastid	55.26	59.0
EES18851	Sorghum	cytosol, plastid	55.16	58.95
TraesCS3A01G512900.1	Wheat	cytosol	54.65	58.73
Os05t0106700-00	Rice	mitochondrion	56.28	58.62
TraesCS3D01G522600.2	Wheat	cytosol	51.79	58.34
TraesCS3B01G581600.2	Wheat	cytosol	54.03	58.0
KRH30227	Soybean	cytosol	26.46	57.43
VIT_18s0166g00210.t01	Wine grape	cytosol	65.37	56.69
KRG91629	Soybean	cytosol	63.23	56.38
KRH35179	Soybean	cytosol	63.94	55.89
CDY48550	Canola	cytosol	55.16	55.1
PGSC0003DMT400002081	Potato	cytosol	63.02	54.8
Solyc04g071040.2.1	Tomato	cytosol	62.92	54.71
KRH70333	Soybean	cytosol	62.51	54.64
GSMUA_Achr8P07850_001	Banana	cytosol	60.88	53.94
AT5G42140.2	Thale cress	cytosol, endoplasmic reticulum, nucleus	58.73	53.34
KRH08750	Soybean	cytosol	34.52	53.06
CDY47138	Canola	cytosol	56.49	52.82
CDY11586	Canola	cytosol	56.79	52.8
Bra016214.1-P	Field mustard	cytosol	56.38	52.57
Bra003698.1-P	Field mustard	mitochondrion	56.18	51.07
AT1G76950.1	Thale cress	cytosol	57.3	50.86
CDX88324	Canola	cytosol	54.65	50.42
CDX87557	Canola	cytosol	54.95	50.14
Bra015708.1-P	Field mustard	cytosol	54.95	50.09
GSMUA_AchrUn_...	Banana	nucleus	57.1	48.48
CDX68076	Canola	cytosol	40.04	47.23
GSMUA_Achr8P00080_001	Banana	endoplasmic reticulum	43.31	45.35
KRH30228	Soybean	cytosol	18.59	44.72
GSMUA_Achr4P00510_001	Banana	cytosol	38.61	39.33
GSMUA_Achr5P08220_001	Banana	cytosol	44.13	39.27
GSMUA_Achr1P02140_001	Banana	cytosol	30.85	33.82
CDY70949	Canola	cytosol	12.05	33.33
GSMUA_Achr5P11650_001	Banana	cytosol	31.46	31.75
GSMUA_Achr6P17690_001	Banana	cytosol	11.95	26.65
GSMUA_Achr8P06920_001	Banana	cytosol	8.89	26.61
GSMUA_Achr7P20980_001	Banana	cytosol	38.92	26.22
GSMUA_Achr3P19000_001	Banana	nucleus	11.64	25.39
GSMUA_Achr9P15560_001	Banana	cytosol	9.09	23.92
GSMUA_Achr10P...	Banana	mitochondrion	10.21	23.81
GSMUA_Achr5P12060_001	Banana	mitochondrion	10.73	23.23
GSMUA_Achr2P10610_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	11.24	22.36
GSMUA_Achr10P...	Banana	cytosol	10.52	21.33
GSMUA_Achr1P00100_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	10.62	21.14
GSMUA_Achr6P29750_001	Banana	cytosol	8.48	20.91
GSMUA_Achr9P02110_001	Banana	plastid	11.24	20.45
GSMUA_AchrUn_...	Banana	cytosol, plastid	10.52	19.18
GSMUA_AchrUn_...	Banana	cytosol	9.91	18.2

Protein Annotations

Gene3D:2.130.10.30	Gene3D:3.30.40.10	MapMan:35.1	InterPro:BRX_N	InterPro:Brevis_radix_dom	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSMUA_Achr6G13030_001	EnsemblPlants:GSMUA_Achr6P13030_001	EnsemblPlants:GSMUA_Achr6T13030_001
InterPro:IPR000408	InterPro:IPR009091	InterPro:IPR013083	InterPro:IPR013591	InterPro:IPR017455	UniProt:M0T6K1
PFAM:PF00415	PFAM:PF01363	PFAM:PF08381	PFAM:PF13713	PRINTS:PR00633	ScanProsite:PS00626
PFscan:PS50012	PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF91	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50985	SUPFAM:SSF57903	SignalP:SignalP-noTM	UniParc:UPI0002963FD5
InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

Putative E3 ubiquitin-protein ligase HERC2 [Source:GMGC_GENE;Acc:GSMUA_Achr6G13030_001]

Coordinates

chr6:-:8735199..8742617

Molecular Weight (calculated)

106866.0 Da

IEP (calculated)

7.829

GRAVY (calculated)

-0.347

Length

979 amino acids

Sequence
(BLAST)

001: MFRFPVAIIM LIIVVRRTTC PFQSCNNRTR SLDLICKDRF ETEVWIAGLK ALVYSGQGVR SKTDVWSNSG PYFDDFKDLI SNSPSDSSIG SILDNSSPDI
101: NFSITTSPKV TSENFVHLER SDVANMLVKG ASSDIIRVSV SSAPSTSSHG SAQDDCDALG DVYVWGEVIF LDVRHVACGV RHAALVTKHG EVFTWGEESG
201: GRLGHAVGAD VVHPRLLESL ANTDLVAFSG PLEGLQVAYV TCGTWHTALI TSTGKLFTFG DGTFGVLGHG NKESVAYPRE VESLMGLKTI AVACGVWHTA
301: AVVEVIVAQS NASVSSGKLF TWGDGDKYRL GHGDKEPRLK PTCVASLIDH DFHKLACGHS LTVGLTTSGQ VFTMGSTVYG QLGNPQSDGK LPCLVEDRLI
401: GESVGEVACG SYHVAVLTTR GEVFTWGKGA NGRLGHGDIE DRKTPNLVEA LKDRAVKYIA CGATFTAAIC QHKWVSGAEQ SQCLACRQAF GFTRKRHNCY
501: HCGLVHCHSC SSRKALRAAL SPNPAKPYRV CDSCYVKLNN VLEFGVNNKR NGLPRLSGES KDRFEKAETK STKSVIPSNF DLIKDLDTKA ARHGKRTDSL
601: TFIRASQVSS LIQLKDLALV GGIDLQQAGP RALHTSLVRS VNPSRAVSPF SRKSSPPRSA SPVPTSSGVY FSKSATDSLK KTNELLTQEV QKLRAQVENL
701: RQHCELQEIE LQKLGKKAQE AMALAAEESA KSKAAKEVIK SLTAQLKDMV EVLHQGVYKN DAVRPVDSPN GVGSHSGPYS ILEVDHQSRF NVNSALTMLS
801: FSTSEPILVD GNTSQNHTLM NARESNKLNL SLQDSHVNSN GMEEDFTARQ RDSNAEKSSS GSKTDIDNKE IENPPDGEMV YKSPSPISSN IQVEAEWIEQ
901: YEPGVYITLV ALRDGTRDLK RVRFSRRKFG ENQAETWWSD NREKVYERYN VRGSDRFSSA VSSQSALKPE EDCMHSSRV

Best Arabidopsis Sequence Match ( AT5G42140.1 )
(BLAST)

0001: MADLVSYGNV VRDIEQALIA LKKGAQLLKY GRKGKPKFCP FRLSNDETSL IWISNGGEKR LKLATVSKIV PGQRTAVFQR YLRPDKDYLS FSLIYSNRKR
0101: TLDLICKDKV EAEVWIAGLK ALISGQAGRS KIDGWSDGGL SIADSRDLTL SSPTNSSVCA SRDFNIADSP YNSTNFPRTS RTENSVSSER SHVASDSPNM
0201: LVRGTGSDAF RVSVSSVQSS SSHGSAPDDC DALGDVYIWG EVLCENVTKF GADKNIGYLG SRSDVLIPKP LESNVVLDVH HIACGVKHAA LVSRQGEVFT
0301: WGEASGGRLG HGMGKDVTGP QLIESLAATS IDFVACGEFH TCAVTMTGEI YTWGDGTHNA GLLGHGTDVS HWIPKRISGP LEGLQIASVS CGPWHTALIT
0401: STGQLFTFGD GTFGVLGHGD KETVFYPREV ESLSGLRTIA VACGVWHAAA IVEVIVTHSS SSVSSGKLFT WGDGDKSRLG HGDKEPRLKP TCVSALIDHT
0501: FHRVACGHSL TVGLTTSGKV YTMGSTVYGQ LGNPNADGKL PCLVEDKLTK DCVEEIACGA YHVAVLTSRN EVFTWGKGAN GRLGHGDVED RKAPTLVDAL
0601: KERHVKNIAC GSNFTAAICL HKWVSGTEQS QCSACRQAFG FTRKRHNCYN CGLVHCHSCS SKKSLKAALA PNPGKPYRVC DSCHSKLSKV SEANIDSRKN
0701: VMPRLSGENK DRLDKTEIRL AKSGIPSNID LIKQLDNRAA RQGKKADTFS LVRTSQTPLT QLKDALTNVA DLRRGPPKPA VTPSSSRPVS PFSRRSSPPR
0801: SVTPIPLNVG LGFSTSIAES LKKTNELLNQ EVVRLRAQAE SLRHRCEVQE FEVQKSVKKV QEAMSLAAEE SAKSEAAKEV IKSLTAQVKD IAALLPPGAY
0901: EAETTRTANL LNGFEQNGFH FTNANGQRQS RSDSMSDTSL ASPLAMPARS MNGLWRNSQS PRNTDASMGE LLSEGVRISN GFSEDGRNSR SSAASASNAS
1001: QVEAEWIEQY EPGVYITLLA LGDGTRDLKR VRFSRRRFRE QQAETWWSEN RERVYEKYNI RGTDRSSVAT SPISQSQF

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain [Source:TAIR;Acc:AT5G42140]
SUBAcon: [endoplasmic reticulum,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.