Factsheet for TraesCS1B01G024400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

mitochondrion 2
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	mitochondrion
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G020400.1	Wheat	cytosol, mitochondrion, nucleus, plastid	98.13	98.13
TraesCS1D01G019900.1	Wheat	cytosol, mitochondrion, nucleus, plastid	98.02	97.8
HORVU1Hr1G002740.1	Barley	cytosol, mitochondrion, nucleus, plastid	96.58	96.58
EES18851	Sorghum	cytosol, plastid	84.45	83.62
Zm00001d035723_P001	Maize	cytosol, mitochondrion, nucleus, plastid	83.46	82.55
Os05t0106700-00	Rice	mitochondrion	85.45	82.45
TraesCS3B01G581600.2	Wheat	cytosol	74.97	74.56
KRH08736	Soybean	endoplasmic reticulum	45.53	59.25
GSMUA_Achr6P13030_001	Banana	endoplasmic reticulum	59.32	54.95
CDY48550	Canola	cytosol	58.21	53.88
VIT_18s0166g00210.t01	Wine grape	cytosol	65.16	52.35
KRG91629	Soybean	cytosol	63.06	52.09
KRH35179	Soybean	cytosol	63.62	51.52
KRH30227	Soybean	cytosol	25.47	51.22
GSMUA_Achr2P20470_001	Banana	endoplasmic reticulum, plasma membrane	55.68	51.17
AT5G42140.2	Thale cress	cytosol, endoplasmic reticulum, nucleus	60.53	50.93
PGSC0003DMT400002081	Potato	cytosol	62.95	50.71
Solyc04g071040.2.1	Tomato	cytosol	62.95	50.71
KRH70333	Soybean	cytosol	62.4	50.54
CDY47138	Canola	cytosol	58.32	50.53
Bra016214.1-P	Field mustard	cytosol	57.99	50.1
CDY11586	Canola	cytosol	57.99	49.95
KRH08750	Soybean	cytosol	34.95	49.76
AT1G76950.1	Thale cress	cytosol	60.42	49.68
Bra003698.1-P	Field mustard	mitochondrion	58.88	49.58
CDX87557	Canola	cytosol	57.88	48.93
Bra015708.1-P	Field mustard	cytosol	57.88	48.88
CDX88324	Canola	cytosol	57.0	48.73
KRH30228	Soybean	cytosol	20.73	46.19
TraesCS2B01G609200.1	Wheat	cytosol	54.24	45.98
CDX68076	Canola	cytosol	39.69	43.37
TraesCS1B01G252700.2	Wheat	cytosol	47.85	39.63
TraesCS1B01G384600.1	Wheat	cytosol	45.42	39.28
TraesCS3B01G543500.1	Wheat	cytosol	46.75	38.93
TraesCS7B01G090600.1	Wheat	cytosol	39.25	34.9
TraesCS2B01G323100.1	Wheat	unclear	15.1	31.0
TraesCS6B01G180900.1	Wheat	cytosol	13.56	30.37
TraesCS2B01G478900.1	Wheat	cytosol, nucleus, peroxisome	33.41	29.39
CDY70949	Canola	cytosol	11.36	29.1
TraesCS6B01G288400.1	Wheat	cytosol	33.85	28.77
TraesCS7B01G200200.1	Wheat	cytosol	12.13	28.28
TraesCS5B01G366300.1	Wheat	mitochondrion	13.01	26.94
TraesCS3B01G347100.2	Wheat	cytosol	11.03	24.57
TraesCS5B01G170800.1	Wheat	cytosol	12.9	24.38
TraesCS2B01G254900.2	Wheat	cytosol	12.35	23.14
TraesCS2B01G360200.1	Wheat	cytosol	11.25	18.75

Protein Annotations

Gene3D:2.130.10.30	Gene3D:3.30.40.10	MapMan:35.1	InterPro:BRX_N	InterPro:Brevis_radix_dom	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR000408	InterPro:IPR009091	InterPro:IPR013083
InterPro:IPR013591	InterPro:IPR017455	PFAM:PF00415	PFAM:PF01363	PFAM:PF08381	PFAM:PF13713
PRINTS:PR00633	ScanProsite:PS00626	PFscan:PS50012	PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870
PANTHER:PTHR22870:SF199	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50985	SUPFAM:SSF57903
EnsemblPlantsGene:TraesCS1B01G024400	EnsemblPlants:TraesCS1B01G024400.1	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD
TIGR:cd00065	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr1B:-:11696159..11699930

Molecular Weight (calculated)

98318.2 Da

IEP (calculated)

8.456

GRAVY (calculated)

-0.463

Length

907 amino acids

Sequence
(BLAST)

001: MYTKGPQLDV LRASISSAPS TSSHGSAQDD CDSLGDVYVW GEVVCDNSAR TSSDTVIRST GKTDFLLPKP LESSLVLDVY HVDCGVRHAS LVTRNGEVFT
101: WGEDSGGRLG HGTREDSVHP RLVESLAACN IDFVACGEFH TCAVTTTGEL YTWGDGTHNV GLLGHGTDVG HWIPRRISGP LEGLQIAYVS CGTWHTALIT
201: SMGQLFTFGD GSFGVLGHGD VKSISCPREV ESLSGLKTIA VACGVWHTAA IVEVIVTQSS ATVSAGKLFT WGDGDKHRLG HGDKEARLKP TCVASLIDYD
301: FYRVACGHSL TVGLTTSGKV WTMGNSVYGQ LGNLNSDGRP CLVEDKIASE HVLQIACGSY HVAVLTSRSE VFTWGKGANG RLGHGDIEDR KVPTTVEALR
401: DRAVRHIACG ANFTAAICLH KWVSGADQSQ CSSCRQPFGF TRKRHNCYNC GLVHCNACTS RKALRAALAP SPGKLHRVCD SCYSKLKNAS TSANKKDLAL
501: GESNGEARVG RSVLSSNMDM IRSLDSKAAK QGKKTDALSF LRNPQVSSLL QLRDIAFSGG ADLNRPAVPR AARTPAARSV TSSRAVSPFS RRSSPPRSTT
601: PVPTTHGLSL SKSATDNLVK ANELLSQEVE RLRAQVDSLR NRCDHHELEL HKSAKKVQEA MTLVAEESAK SKAAKEVIKS LTAQLKDMAE RLPPEHGAYD
701: FNEAKQVHGP NGIEPHVATY SSMNGKVHQA RNELLNAASP NSGRSPHSNG GITNQHKLLG NISENSEGST HSLRITSPHG PDRPHRRAHS NSDEMLSASS
801: RTDDNVSIDA RSLQNGEDGY KPRGTISISS NQVQAEWIEQ YEPGVYITLT TLRDGTRDLK RVRFSRRRFG EHQAENWWNE NREKVYEKYN VRSSERVSSA
901: ASTRSAY

Best Arabidopsis Sequence Match ( AT5G42140.1 )
(BLAST)

0001: MADLVSYGNV VRDIEQALIA LKKGAQLLKY GRKGKPKFCP FRLSNDETSL IWISNGGEKR LKLATVSKIV PGQRTAVFQR YLRPDKDYLS FSLIYSNRKR
0101: TLDLICKDKV EAEVWIAGLK ALISGQAGRS KIDGWSDGGL SIADSRDLTL SSPTNSSVCA SRDFNIADSP YNSTNFPRTS RTENSVSSER SHVASDSPNM
0201: LVRGTGSDAF RVSVSSVQSS SSHGSAPDDC DALGDVYIWG EVLCENVTKF GADKNIGYLG SRSDVLIPKP LESNVVLDVH HIACGVKHAA LVSRQGEVFT
0301: WGEASGGRLG HGMGKDVTGP QLIESLAATS IDFVACGEFH TCAVTMTGEI YTWGDGTHNA GLLGHGTDVS HWIPKRISGP LEGLQIASVS CGPWHTALIT
0401: STGQLFTFGD GTFGVLGHGD KETVFYPREV ESLSGLRTIA VACGVWHAAA IVEVIVTHSS SSVSSGKLFT WGDGDKSRLG HGDKEPRLKP TCVSALIDHT
0501: FHRVACGHSL TVGLTTSGKV YTMGSTVYGQ LGNPNADGKL PCLVEDKLTK DCVEEIACGA YHVAVLTSRN EVFTWGKGAN GRLGHGDVED RKAPTLVDAL
0601: KERHVKNIAC GSNFTAAICL HKWVSGTEQS QCSACRQAFG FTRKRHNCYN CGLVHCHSCS SKKSLKAALA PNPGKPYRVC DSCHSKLSKV SEANIDSRKN
0701: VMPRLSGENK DRLDKTEIRL AKSGIPSNID LIKQLDNRAA RQGKKADTFS LVRTSQTPLT QLKDALTNVA DLRRGPPKPA VTPSSSRPVS PFSRRSSPPR
0801: SVTPIPLNVG LGFSTSIAES LKKTNELLNQ EVVRLRAQAE SLRHRCEVQE FEVQKSVKKV QEAMSLAAEE SAKSEAAKEV IKSLTAQVKD IAALLPPGAY
0901: EAETTRTANL LNGFEQNGFH FTNANGQRQS RSDSMSDTSL ASPLAMPARS MNGLWRNSQS PRNTDASMGE LLSEGVRISN GFSEDGRNSR SSAASASNAS
1001: QVEAEWIEQY EPGVYITLLA LGDGTRDLKR VRFSRRRFRE QQAETWWSEN RERVYEKYNI RGTDRSSVAT SPISQSQF

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain [Source:TAIR;Acc:AT5G42140]
SUBAcon: [endoplasmic reticulum,plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.